FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3055, 208 aa 1>>>pF1KE3055 208 - 208 aa - 208 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1477+/-0.000933; mu= 8.8222+/- 0.056 mean_var=70.9061+/-14.451, 0's: 0 Z-trim(106.1): 33 B-trim: 271 in 3/48 Lambda= 0.152311 statistics sampled from 8748 (8768) to 8748 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width: 16 Scan time: 1.820 The best scores are: opt bits E(32554) CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 1352 306.1 1e-83 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 383 93.1 1.2e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 380 92.5 1.8e-19 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 378 92.0 2.5e-19 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 376 91.6 3.4e-19 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 368 89.8 1.2e-18 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 361 88.3 3.4e-18 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 360 88.1 3.9e-18 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 357 87.4 6.2e-18 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 357 87.4 6.2e-18 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 355 87.0 8.4e-18 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 349 85.7 2.1e-17 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 345 84.8 3.8e-17 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 345 84.8 3.9e-17 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 342 84.1 6.1e-17 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 340 83.7 8.3e-17 >>CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 (208 aa) initn: 1352 init1: 1352 opt: 1352 Z-score: 1616.4 bits: 306.1 E(32554): 1e-83 Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF 130 140 150 160 170 180 190 200 pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR :::::::::::::::::::::::::::: CCDS34 SLTEKLSKQGRPLNDMKQELTTEFRSPR 190 200 >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 340 init1: 340 opt: 383 Z-score: 466.3 bits: 93.1 E(32554): 1.2e-19 Smith-Waterman score: 383; 37.4% identity (70.9% similar) in 182 aa overlap (10-189:10-188) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF :::.:. . :: : .. . :...: :: ... .: ..:: :..: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLD-NRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .::. .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. : CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 EALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF :: . .. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : . CCDS65 EACV-MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSL 120 130 140 150 160 170 180 190 200 pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR .: :.: .. CCDS65 STNLQERLRRKE 180 >>CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 (187 aa) initn: 370 init1: 320 opt: 380 Z-score: 462.8 bits: 92.5 E(32554): 1.8e-19 Smith-Waterman score: 380; 37.2% identity (68.3% similar) in 183 aa overlap (1-183:1-182) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF : : .. .:.: ::: .:.. .:. : ::. : . ::: .:. .. :: : :: CCDS64 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .:.. . ::.:: . ..::::.::..:: . : ::.:. .:..: ....:...: CCDS64 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF .... . :: . : :. :..: :. :: ::. ..:: :::.::.::: : ..:. CCDS64 KTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFIN 120 130 140 150 160 170 190 200 pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR :: CCDS64 RLTGYLRN 180 >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 340 init1: 340 opt: 378 Z-score: 460.3 bits: 92.0 E(32554): 2.5e-19 Smith-Waterman score: 378; 38.9% identity (73.9% similar) in 157 aa overlap (35-189:35-189) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: ... .: ..:: :..: .:: CCDS65 PFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. ::: . CCDS65 EEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSL .. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : . .: CCDS65 -MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTNL 130 140 150 160 170 180 190 200 pF1KE3 TEKLSKQGRPLNDMKQELTTEFRSPR :.: .. CCDS65 QERLRRKE 190 >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 347 init1: 347 opt: 376 Z-score: 458.0 bits: 91.6 E(32554): 3.4e-19 Smith-Waterman score: 376; 34.8% identity (67.9% similar) in 184 aa overlap (7-189:5-188) 10 20 30 40 50 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVN-QESLKLLNKLQTLSIQQCLPHRKN :. ...:.. . : .: . : ...: ...: :. ... .: .:: :.. CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHD 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY : .::. .. .:.::......::::.:: :.:: .. : .:.:. ::: :.: ::.. CCDS65 FEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMND 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV ::: . :. : ... : :: ::.:: :: .. :: ::: .:..:: : : : CCDS65 LEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFS 120 130 140 150 160 170 180 190 200 pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR .: ..: .. CCDS65 TNLQKRLRRKD 180 >>CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 (195 aa) initn: 389 init1: 344 opt: 368 Z-score: 448.3 bits: 89.8 E(32554): 1.2e-18 Smith-Waterman score: 368; 35.7% identity (69.2% similar) in 185 aa overlap (11-193:11-192) 10 20 30 40 50 60 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF ::. . . . :: : .. .....: ::.... .: :: :..: CCDS64 MALLFPLLAALVMTSYSPVGSLGCDLPQ-NHGLLSRNTLVLLHQMRRISPFLCLKDRRDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL .::. .. .: ::.:....::::::::::::... : .:. . ... :::::..: CCDS64 RFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHL 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 EA-LMGLEAEKLS-GTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF :. :. . .: : :...: : : . ::. :. ::... :: ::: .:..:: . ::. CCDS64 ETCLLQVVGEGESAGAISSPALTL--RRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFL 120 130 140 150 160 170 180 190 200 pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR .. :.: .. : : CCDS64 STNMQERLRSKDRDLGSS 180 190 >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 365 init1: 350 opt: 361 Z-score: 440.2 bits: 88.3 E(32554): 3.4e-18 Smith-Waterman score: 361; 38.1% identity (69.7% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: ::... .: .:: :..: .:: CCDS64 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFRIPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: . CCDS64 EEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . CCDS64 IQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR .: .. CCDS64 RLRRKD >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 364 init1: 349 opt: 360 Z-score: 439.0 bits: 88.1 E(32554): 3.9e-18 Smith-Waterman score: 360; 38.7% identity (67.7% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: .. .: .:: :..: ::: CCDS65 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFGLPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.:: .....::::.:: :.:: .. : .::.. ::: .:.:::. ::: . CCDS65 EEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . CCDS65 IQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR : .. CCDS65 ILRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 330 init1: 314 opt: 357 Z-score: 435.4 bits: 87.4 E(32554): 6.2e-18 Smith-Waterman score: 357; 34.2% identity (64.7% similar) in 190 aa overlap (1-189:1-188) 10 20 30 40 50 pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQV-NQESLKLLNKLQTLSIQQCLPHRKN : . . .::.: .: :: : : ... :...: .. .. .: .:: :.. CCDS65 MALPFVLLMALVVLNCKSICSLGCDLP--QTHSLSNRRTLMIMAQMGRISPFSCLKDRHD 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY : .::. .. .:.::......::::.:: :.:: .. : :.:. .:: .:.:::. CCDS65 FGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLND 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV ::: : :. . : . . : :. ::.:: :: .. :: ::: .:..:: : . . CCDS65 LEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLS 120 130 140 150 160 170 180 190 200 pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR .: :.: .. CCDS65 ANLQERLRRKE 180 >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 361 init1: 346 opt: 357 Z-score: 435.4 bits: 87.4 E(32554): 6.2e-18 Smith-Waterman score: 357; 37.4% identity (69.0% similar) in 155 aa overlap (35-189:34-188) 10 20 30 40 50 60 pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ :...: :: .. .: .:: :..: .:. CCDS64 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFGFPE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM . .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: . CCDS64 EEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE :. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: . CCDS64 IQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK 130 140 150 160 170 180 190 200 pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR .: .. CCDS64 RLRRKD 208 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:21:18 2016 done: Mon Nov 7 03:21:18 2016 Total Scan time: 1.820 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]