FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3134, 340 aa 1>>>pF1KE3134 340 - 340 aa - 340 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6644+/-0.000375; mu= 20.3450+/- 0.023 mean_var=68.5530+/-13.791, 0's: 0 Z-trim(112.8): 27 B-trim: 139 in 2/50 Lambda= 0.154903 statistics sampled from 21812 (21834) to 21812 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.256), width: 16 Scan time: 7.970 The best scores are: opt bits E(85289) NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 565 135.3 1.9e-31 NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 565 135.3 1.9e-31 NP_950245 (OMIM: 615394) 5-methylcytosine rRNA met ( 384) 565 135.3 2.1e-31 NP_001245239 (OMIM: 164031) probable 28S rRNA (cyt ( 628) 278 71.4 6e-12 NP_006161 (OMIM: 164031) probable 28S rRNA (cytosi ( 808) 278 71.5 7.2e-12 NP_001028886 (OMIM: 164031) probable 28S rRNA (cyt ( 808) 278 71.5 7.2e-12 XP_005253748 (OMIM: 164031) PREDICTED: probable 28 ( 812) 278 71.5 7.2e-12 NP_001245237 (OMIM: 164031) probable 28S rRNA (cyt ( 812) 278 71.5 7.2e-12 NP_001245238 (OMIM: 164031) probable 28S rRNA (cyt ( 845) 278 71.5 7.4e-12 NP_001161820 (OMIM: 615732) probable 28S rRNA (cyt ( 391) 188 51.1 4.8e-06 NP_060514 (OMIM: 615732) probable 28S rRNA (cytosi ( 429) 188 51.1 5.1e-06 NP_683759 (OMIM: 615732) probable 28S rRNA (cytosi ( 466) 188 51.1 5.5e-06 NP_001161819 (OMIM: 615732) probable 28S rRNA (cyt ( 470) 188 51.1 5.5e-06 NP_001180384 (OMIM: 610916,611091) tRNA (cytosine( ( 732) 166 46.4 0.00023 NP_060225 (OMIM: 610916,611091) tRNA (cytosine(34) ( 767) 164 46.0 0.00032 >>NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA meth (335 aa) initn: 534 init1: 206 opt: 565 Z-score: 685.7 bits: 135.3 E(85289): 1.9e-31 Smith-Waterman score: 597; 35.8% identity (63.6% similar) in 335 aa overlap (29-333:3-333) 10 20 30 40 50 pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPSCWQYAVLLNRF- :: ..:: : ..: : : . .:..:.: : NP_001 MTYSVQFGDLWPSIRVSLLSEQ--KYGALVNNFA 10 20 30 60 70 80 90 pF1KE3 ---NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SVKCY-LSRTP-GR . .:: ::. .. .. :.:. :. ...:. ..: .: NP_001 AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISR 40 50 60 70 80 90 100 110 120 130 140 150 pF1KE3 IPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLH .: : .. .:::..:::::::::: :. :. :::::::::::..:::: .: : NP_001 FPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA 100 110 120 130 140 150 160 170 180 190 200 210 pF1KE3 CNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMFDKVLVDAPCSND :. . :. :.. :.:..:. . : ..:. :::: :. . . .:.::::.::..: NP_001 ANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD 160 170 180 190 200 210 220 230 240 250 260 270 pF1KE3 RSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDV : : ... : : : ..:. ::.::..:: ... : .::: .:::::.::. .:. : NP_001 RHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV 220 230 240 250 260 270 280 290 300 310 320 330 pF1KE3 IS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAK .. :.: .. .:. . :. . :. : : . : : ::::. .:::: : NP_001 VQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPNLMANFGPMYFCK 280 290 300 310 320 330 340 pF1KE3 LKKSWSTGKW ... NP_001 MRRLT >>NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA meth (335 aa) initn: 534 init1: 206 opt: 565 Z-score: 685.7 bits: 135.3 E(85289): 1.9e-31 Smith-Waterman score: 597; 35.8% identity (63.6% similar) in 335 aa overlap (29-333:3-333) 10 20 30 40 50 pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPSCWQYAVLLNRF- :: ..:: : ..: : : . .:..:.: : NP_001 MTYSVQFGDLWPSIRVSLLSEQ--KYGALVNNFA 10 20 30 60 70 80 90 pF1KE3 ---NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SVKCY-LSRTP-GR . .:: ::. .. .. :.:. :. ...:. ..: .: NP_001 AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISR 40 50 60 70 80 90 100 110 120 130 140 150 pF1KE3 IPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLH .: : .. .:::..:::::::::: :. :. :::::::::::..:::: .: : NP_001 FPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA 100 110 120 130 140 150 160 170 180 190 200 210 pF1KE3 CNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMFDKVLVDAPCSND :. . :. :.. :.:..:. . : ..:. :::: :. . . .:.::::.::..: NP_001 ANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD 160 170 180 190 200 210 220 230 240 250 260 270 pF1KE3 RSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDV : : ... : : : ..:. ::.::..:: ... : .::: .:::::.::. .:. : NP_001 RHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV 220 230 240 250 260 270 280 290 300 310 320 330 pF1KE3 IS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAK .. :.: .. .:. . :. . :. : : . : : ::::. .:::: : NP_001 VQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPNLMANFGPMYFCK 280 290 300 310 320 330 340 pF1KE3 LKKSWSTGKW ... NP_001 MRRLT >>NP_950245 (OMIM: 615394) 5-methylcytosine rRNA methylt (384 aa) initn: 534 init1: 206 opt: 565 Z-score: 684.9 bits: 135.3 E(85289): 2.1e-31 Smith-Waterman score: 614; 35.4% identity (64.1% similar) in 345 aa overlap (19-333:42-382) 10 20 30 40 pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPS ...:..:. :: ..:: : ..: : : . NP_950 LLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQ 20 30 40 50 60 70 50 60 70 80 pF1KE3 CWQYAVLLNRF----NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SV .:..:.: : . .:: ::. .. .. :.:. :. .. NP_950 --KYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNL 80 90 100 110 120 90 100 110 120 130 140 pF1KE3 KCY-LSRTP-GRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSI .:. ..: .:.: : .. .:::..:::::::::: :. :. :::::::::::.. NP_950 RCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 ALLQCACPGYLHCNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMF :::: .: : :. . :. :.. :.:..:. . : ..:. :::: :. . . . NP_950 ALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE3 DKVLVDAPCSNDRSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYS :.::::.::..:: : ... : : : ..:. ::.::..:: ... : .::: .::: NP_950 DRVLVDVPCTTDRHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYS 250 260 270 280 290 300 270 280 290 300 310 pF1KE3 TCTLSKAENQDVIS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPD ::.::. .:. :.. :.: .. .:. . :. . :. : : . : : ::::. NP_950 TCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPN 310 320 330 340 350 360 320 330 340 pF1KE3 KGKAWGPMYVAKLKKSWSTGKW .:::: :... NP_950 LMANFGPMYFCKMRRLT 370 380 >>NP_001245239 (OMIM: 164031) probable 28S rRNA (cytosin (628 aa) initn: 271 init1: 137 opt: 278 Z-score: 335.5 bits: 71.4 E(85289): 6e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 400 410 420 430 440 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 450 460 470 480 490 500 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 510 520 530 540 550 560 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTDGVLLCRSGWTAVVQSQLIATSTFQV 570 580 590 600 610 >>NP_006161 (OMIM: 164031) probable 28S rRNA (cytosine(4 (808 aa) initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: NP_006 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. NP_006 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 400 410 420 430 440 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. NP_006 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 450 460 470 480 490 500 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . NP_006 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 510 520 530 540 550 560 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: NP_006 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP 570 580 590 600 610 >>NP_001028886 (OMIM: 164031) probable 28S rRNA (cytosin (808 aa) initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 400 410 420 430 440 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 450 460 470 480 490 500 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 510 520 530 540 550 560 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP 570 580 590 600 610 >>XP_005253748 (OMIM: 164031) PREDICTED: probable 28S rR (812 aa) initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:366-586) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: XP_005 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. XP_005 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 400 410 420 430 440 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. XP_005 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 450 460 470 480 490 500 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . XP_005 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 510 520 530 540 550 560 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: XP_005 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP 570 580 590 600 610 620 >>NP_001245237 (OMIM: 164031) probable 28S rRNA (cytosin (812 aa) initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:366-586) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 340 350 360 370 380 390 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 400 410 420 430 440 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 450 460 470 480 490 500 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 510 520 530 540 550 560 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP 570 580 590 600 610 620 >>NP_001245238 (OMIM: 164031) probable 28S rRNA (cytosin (845 aa) initn: 271 init1: 137 opt: 278 Z-score: 333.8 bits: 71.5 E(85289): 7.4e-12 Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:399-619) 90 100 110 120 130 140 pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP :.: .:.:.:::.:: .. :..::.: :: NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP 370 380 390 400 410 420 150 160 170 180 190 200 pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ :::. . : : . :. .. ::. . .:. . . :.: .:. :::.. NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF---- 430 440 450 460 470 480 210 220 230 240 250 pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL-- :.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: .. NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA 490 500 510 520 530 260 270 280 290 300 pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ . :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. . NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 540 550 560 570 580 590 310 320 330 340 pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW . : . : ...::.:: NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP 600 610 620 630 640 650 >>NP_001161820 (OMIM: 615732) probable 28S rRNA (cytosin (391 aa) initn: 167 init1: 95 opt: 188 Z-score: 229.5 bits: 51.1 E(85289): 4.8e-06 Smith-Waterman score: 188; 26.3% identity (53.6% similar) in 224 aa overlap (68-283:132-339) 40 50 60 70 80 90 pF1KE3 NTVREILTSPSCWQYAVLLNRFNYPFELEKDLH-LKGYHTLSQGSLPNYPKSVKCYLSRT ::. ::: : : . .:. : NP_001 VNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE--------LLVF 110 120 130 140 150 100 110 120 130 140 150 pF1KE3 PGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKS---IALLQCA :.. ..: . . : . :: ::.. :. : .:.: :::::.:. :::. NP_001 PAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN- 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE3 CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFD--KVLVD : . . :. :: .. ... . .. ...: : .. ..:.. . .:.: NP_001 -QGKIFAFDLDAKRL----ASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 220 230 240 250 260 220 230 240 250 260 pF1KE3 APCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELLRSAIKALRPGGI--LVYSTCTLSK ::. : . : . .. . . : : :. .:: .. ::::::.: . NP_001 PSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQ 270 280 290 300 310 320 270 280 290 300 310 320 pF1KE3 AENQDVISEILNSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVA ::.::. . :... NP_001 EENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIE 330 340 350 360 370 380 340 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:21:53 2016 done: Mon Nov 7 03:21:54 2016 Total Scan time: 7.970 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]