FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9676, 288 aa 1>>>pF1KE9676 288 - 288 aa - 288 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6324+/-0.000351; mu= 13.6290+/- 0.022 mean_var=71.6011+/-14.364, 0's: 0 Z-trim(114.2): 22 B-trim: 18 in 1/52 Lambda= 0.151570 statistics sampled from 23923 (23942) to 23923 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.281), width: 16 Scan time: 6.550 The best scores are: opt bits E(85289) NP_001012267 (OMIM: 611505) centromere protein P i ( 288) 1873 418.6 6.8e-117 XP_011516991 (OMIM: 611505) PREDICTED: centromere ( 192) 1229 277.7 1.2e-74 NP_001273898 (OMIM: 611505) centromere protein P i ( 176) 1140 258.2 8e-69 XP_011516987 (OMIM: 611505) PREDICTED: centromere ( 224) 1004 228.5 8.8e-60 XP_016870204 (OMIM: 611505) PREDICTED: centromere ( 261) 1004 228.6 1e-59 NP_001273900 (OMIM: 611505) centromere protein P i ( 115) 645 149.9 2.1e-36 >>NP_001012267 (OMIM: 611505) centromere protein P isofo (288 aa) initn: 1873 init1: 1873 opt: 1873 Z-score: 2219.6 bits: 418.6 E(85289): 6.8e-117 Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288) 10 20 30 40 50 60 pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT 190 200 210 220 230 240 250 260 270 280 pF1KE9 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN 250 260 270 280 >>XP_011516991 (OMIM: 611505) PREDICTED: centromere prot (192 aa) initn: 1229 init1: 1229 opt: 1229 Z-score: 1461.2 bits: 277.7 E(85289): 1.2e-74 Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT :::::::: XP_011 KRTFKHLKPEQS 190 >>NP_001273898 (OMIM: 611505) centromere protein P isofo (176 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1356.6 bits: 258.2 E(85289): 8e-69 Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 176 aa overlap (113-288:1-176) 90 100 110 120 130 140 pF1KE9 KQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEFQILEIQNKERLSSAVTDLNIIM :::::::::::::::::::::::::::::: NP_001 MVTFQLEFQILEIQNKERLSSAVTDLNIIM 10 20 30 150 160 170 180 190 200 pF1KE9 EPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPS 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE9 SCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSF 100 110 120 130 140 150 270 280 pF1KE9 RTLVGLLGIEAALESLIKSLCAEENN :::::::::::::::::::::::::: NP_001 RTLVGLLGIEAALESLIKSLCAEENN 160 170 >>XP_011516987 (OMIM: 611505) PREDICTED: centromere prot (224 aa) initn: 1004 init1: 1004 opt: 1004 Z-score: 1194.3 bits: 228.5 E(85289): 8.8e-60 Smith-Waterman score: 1006; 75.7% identity (84.7% similar) in 222 aa overlap (1-220:1-207) 10 20 30 40 50 60 pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR :::::::::::::::::::::::::::::::::::: . : .: .: . :.: XP_011 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRLGSH-----FVESDWYFRKGAEHR 130 140 150 160 170 190 200 210 220 230 pF1KE9 KRTFKHLKEKYPDAV--YLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDL .. . . ::.. :.... :: . . :...: XP_011 SEDLDFI----PDSTTWYITRS------GIAESYKSMFKFIINCQTVFQNDHTVLYSHQ 180 190 200 210 220 240 250 260 270 280 pF1KE9 LTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN >>XP_016870204 (OMIM: 611505) PREDICTED: centromere prot (261 aa) initn: 1026 init1: 1004 opt: 1004 Z-score: 1193.3 bits: 228.6 E(85289): 1e-59 Smith-Waterman score: 1004; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR :::::::::::::::::::::::::::::::::::: XP_016 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRLGSHFVESDWYFRKGAEHRSEDLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT XP_016 FIPDSTTCKLPLLLEFLSSLSLLLCNLNVICLIMNLFLVFHYRSVVFQTGLVSLGFEKFL 190 200 210 220 230 240 >>NP_001273900 (OMIM: 611505) centromere protein P isofo (115 aa) initn: 645 init1: 645 opt: 645 Z-score: 774.5 bits: 149.9 E(85289): 2.1e-36 Smith-Waterman score: 645; 99.0% identity (100.0% similar) in 101 aa overlap (188-288:15-115) 160 170 180 190 200 210 pF1KE9 EERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFE .::::::::::::::::::::::::::::: NP_001 MEAPSWSVLQRSGDEEKYPDAVYLSEGPSSCSMGIRSASRPGFE 10 20 30 40 220 230 240 250 260 270 pF1KE9 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES 50 60 70 80 90 100 280 pF1KE9 LIKSLCAEENN ::::::::::: NP_001 LIKSLCAEENN 110 288 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:26:56 2016 done: Mon Nov 7 03:26:56 2016 Total Scan time: 6.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]