FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1126, 631 aa 1>>>pF1KE1126 631 - 631 aa - 631 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4292+/-0.00091; mu= 16.1326+/- 0.055 mean_var=157.9466+/-32.074, 0's: 0 Z-trim(112.4): 97 B-trim: 3 in 1/50 Lambda= 0.102051 statistics sampled from 13057 (13165) to 13057 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.404), width: 16 Scan time: 3.680 The best scores are: opt bits E(32554) CCDS58529.1 RNF112 gene_id:7732|Hs108|chr17 ( 631) 4315 647.6 1.5e-185 >>CCDS58529.1 RNF112 gene_id:7732|Hs108|chr17 (631 aa) initn: 4315 init1: 4315 opt: 4315 Z-score: 3444.7 bits: 647.6 E(32554): 1.5e-185 Smith-Waterman score: 4315; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631) 10 20 30 40 50 60 pF1KE1 MPRPALSVTSFCHRLGKRERKQSFMGNSGNSWSHTPFPKLELGLGPQPMAPRELPTCSIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MPRPALSVTSFCHRLGKRERKQSFMGNSGNSWSHTPFPKLELGLGPQPMAPRELPTCSIC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LERLRDPISLDCGHDFCIRCFSTHRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LERLRDPISLDCGHDFCIRCFSTHRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PLPPALQETCPVRAEPLLLVRINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 PLPPALQETCPVRAEPLLLVRINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GKSFLLNHLLQGLPGLESGEGGRPRGGEASLQGCRWGANGLARGIWMWSHPFLLGKEGKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GKSFLLNHLLQGLPGLESGEGGRPRGGEASLQGCRWGANGLARGIWMWSHPFLLGKEGKK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTSQELKDTDLDYLEMFVHVAEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTSQELKDTDLDYLEMFVHVAEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 MGKHYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQGKRARCCLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MGKHYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQGKRARCCLLP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 APGRRRMNQGHASPGDTDDDFRHLLGAYVSDVLSAAPQHAKSRCQGYWNEGRAVARGDRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 APGRRRMNQGHASPGDTDDDFRHLLGAYVSDVLSAAPQHAKSRCQGYWNEGRAVARGDRR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 LLTGQQLAQEIKNLSGWMGRTGPGFTSPDEMAAQLHDLRKVEAAKREFEEYVRQQDVATK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LLTGQQLAQEIKNLSGWMGRTGPGFTSPDEMAAQLHDLRKVEAAKREFEEYVRQQDVATK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 RIFSALRVLPDTMRNLLSTQKDAILARHGVALLCKGRDQTLEALEAELQATAKAFMDSYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 RIFSALRVLPDTMRNLLSTQKDAILARHGVALLCKGRDQTLEALEAELQATAKAFMDSYT 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 MRFCGHLAAVGGAVGAGLMGLAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MRFCGHLAAVGGAVGAGLMGLAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGV 550 560 570 580 590 600 610 620 630 pF1KE1 GAGLAATVGCMEKEEDERLLEGDREPLLQEE ::::::::::::::::::::::::::::::: CCDS58 GAGLAATVGCMEKEEDERLLEGDREPLLQEE 610 620 630 631 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:31:25 2016 done: Mon Nov 7 03:31:26 2016 Total Scan time: 3.680 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]