(Linear) (Six-base) MAPSORT of: KIAA0395.seq Check: 7718 from: 1 to: 2868 KIAA0395.orf With 182 enzymes: SgfI * March 22, 2012 15:29 .. AatII G_ACGT'C Cuts at: 0 2853 2868 Size: 2853 15 AccI GT'mk_AC Cuts at: 0 655 2868 Size: 655 2213 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 122 530 602 976 1090 2206 2225 2476 Size: 122 408 72 374 114 1116 19 251 Cuts at: 2476 2868 Size: 392 Fragments arranged by size: 1116 408 392 374 251 122 114 72 19 AflIII A'CryG_T Cuts at: 0 388 2868 Size: 388 2480 AhdI GACnn_n'nnGTC Cuts at: 0 1276 2868 Size: 1276 1592 AleI CACnn'nnGTG Cuts at: 0 1585 2868 Size: 1585 1283 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2663 2868 Size: 2663 205 AlwNI CAG_nnn'CTG Cuts at: 0 120 867 2868 Size: 120 747 2001 Fragments arranged by size: 2001 747 120 ApaI G_GGCC'C Cuts at: 0 767 2710 2868 Size: 767 1943 158 Fragments arranged by size: 1943 767 158 ApoI r'AATT_y Cuts at: 0 593 2868 Size: 593 2275 BanI G'GyrC_C Cuts at: 0 1368 1814 2239 2868 Size: 1368 446 425 629 Fragments arranged by size: 1368 629 446 425 BanII G_rGCy'C Cuts at: 0 503 767 1001 1663 1860 1878 2546 2626 Size: 503 264 234 662 197 18 668 80 Cuts at: 2626 2710 2726 2795 2822 2868 Size: 84 16 69 27 46 Fragments arranged by size: 668 662 503 264 234 197 84 80 69 46 27 18 16 BbsI GAAGACnn'nnnn_ Cuts at: 0 52 2489 2868 Size: 52 2437 379 Fragments arranged by size: 2437 379 52 BbvCI CC'TCA_GC Cuts at: 0 1151 2006 2024 2060 2868 Size: 1151 855 18 36 808 Fragments arranged by size: 1151 855 808 36 18 BciVI GTATCCnnnnn_n' Cuts at: 0 1037 2868 Size: 1037 1831 BfrBI ATG'CAT Cuts at: 0 32 2868 Size: 32 2836 BglII A'GATC_T Cuts at: 0 1046 2868 Size: 1046 1822 Bme1580I G_kGCm'C Cuts at: 0 767 2710 2868 Size: 767 1943 158 Fragments arranged by size: 1943 767 158 BmrI ACTGGGnnnn_n' Cuts at: 0 34 497 829 1422 2868 Size: 34 463 332 593 1446 Fragments arranged by size: 1446 593 463 332 34 BmtI G_CTAG'C Cuts at: 0 1484 2868 Size: 1484 1384 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2052 2829 2868 Size: 2052 777 39 Fragments arranged by size: 2052 777 39 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 680 805 1647 1700 1900 2868 Size: 680 125 842 53 200 968 Fragments arranged by size: 968 842 680 200 125 53 Bpu10I CC'TnA_GC Cuts at: 0 907 1151 1862 2006 2024 2060 2098 2868 Size: 907 244 711 144 18 36 38 770 Fragments arranged by size: 907 770 711 244 144 38 36 18 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 589 1027 2868 Size: 589 438 1841 Fragments arranged by size: 1841 589 438 BsaI GGTCTCn'nnnn_ Cuts at: 0 85 2005 2109 2662 2868 Size: 85 1920 104 553 206 Fragments arranged by size: 1920 553 206 104 85 BsaHI Gr'CG_yC Cuts at: 0 2850 2868 Size: 2850 18 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 465 495 534 564 1524 1554 2368 2398 Size: 465 30 39 30 960 30 814 30 Cuts at: 2398 2868 Size: 470 Fragments arranged by size: 960 814 470 465 39 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1111 1426 2023 2041 2065 2680 2868 Size: 1111 315 597 18 24 615 188 Fragments arranged by size: 1111 615 597 315 188 24 18 BseYI C'CCAG_C Cuts at: 0 80 110 166 1450 2134 2235 2318 2627 Size: 80 30 56 1284 684 101 83 309 Cuts at: 2627 2868 Size: 241 Fragments arranged by size: 1284 684 309 241 101 83 80 56 30 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 360 2868 Size: 360 2508 BsiHKAI G_wGCw'C Cuts at: 0 211 299 475 1001 2546 2626 2726 2868 Size: 211 88 176 526 1545 80 100 142 Fragments arranged by size: 1545 526 211 176 142 100 88 80 BsmI GAATG_Cn' Cuts at: 0 914 1760 2007 2037 2868 Size: 914 846 247 30 831 Fragments arranged by size: 914 846 831 247 30 BsmBI CGTCTCn'nnnn_ Cuts at: 0 1980 2868 Size: 1980 888 Bsp1286I G_dGCh'C Cuts at: 0 211 299 475 503 767 1001 1663 1860 Size: 211 88 176 28 264 234 662 197 Cuts at: 1860 1878 2546 2626 2710 2726 2795 2822 2868 Size: 18 668 80 84 16 69 27 46 Fragments arranged by size: 668 662 264 234 211 197 176 88 84 80 69 46 28 27 18 16 BspHI T'CATG_A Cuts at: 0 557 1506 2868 Size: 557 949 1362 Fragments arranged by size: 1362 949 557 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1765 2435 2600 2622 2868 Size: 1765 670 165 22 246 Fragments arranged by size: 1765 670 246 165 22 BsrBI CCG'CTC Cuts at: 0 1225 2868 Size: 1225 1643 BsrDI GCAATG_nn' Cuts at: 0 1206 2522 2868 Size: 1206 1316 346 Fragments arranged by size: 1316 1206 346 BstAPI GCAn_nnn'nTGC Cuts at: 0 120 139 338 2334 2868 Size: 120 19 199 1996 534 Fragments arranged by size: 1996 534 199 120 19 BstEII G'GTnAC_C Cuts at: 0 1017 1752 2868 Size: 1017 735 1116 Fragments arranged by size: 1116 1017 735 BstXI CCAn_nnnn'nTGG Cuts at: 0 2679 2710 2868 Size: 2679 31 158 Fragments arranged by size: 2679 158 31 BstYI r'GATC_y Cuts at: 0 117 253 1046 2868 Size: 117 136 793 1822 Fragments arranged by size: 1822 793 136 117 Bsu36I CC'TnA_GG Cuts at: 0 362 1094 1748 2194 2252 2804 2868 Size: 362 732 654 446 58 552 64 Fragments arranged by size: 732 654 552 446 362 64 58 BtgI C'CryG_G Cuts at: 0 872 935 2410 2678 2868 Size: 872 63 1475 268 190 Fragments arranged by size: 1475 872 268 190 63 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1684 2868 Size: 1684 1184 BtsI GCAGTG_nn' Cuts at: 0 153 339 865 1641 2647 2700 2868 Size: 153 186 526 776 1006 53 168 Fragments arranged by size: 1006 776 526 186 168 153 53 DraIII CAC_nnn'GTG Cuts at: 0 1242 1385 2868 Size: 1242 143 1483 Fragments arranged by size: 1483 1242 143 EaeI y'GGCC_r Cuts at: 0 2 191 425 875 1295 2087 2362 2413 Size: 2 189 234 450 420 792 275 51 Cuts at: 2413 2463 2868 Size: 50 405 Fragments arranged by size: 792 450 420 405 275 234 189 51 50 2 EarI CTCTTCn'nnn_ Cuts at: 0 1232 1910 2042 2072 2579 2868 Size: 1232 678 132 30 507 289 Fragments arranged by size: 1232 678 507 289 132 30 EcoICRI GAG'CTC Cuts at: 0 999 2544 2624 2724 2868 Size: 999 1545 80 100 144 Fragments arranged by size: 1545 999 144 100 80 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 122 530 602 680 805 976 1090 1647 Size: 122 408 72 78 125 171 114 557 Cuts at: 1647 1700 1900 2206 2225 2476 2868 Size: 53 200 306 19 251 392 Fragments arranged by size: 557 408 392 306 251 200 171 125 122 114 78 72 53 19 EcoO109I rG'GnC_Cy Cuts at: 0 106 764 882 1743 2589 2706 2707 2868 Size: 106 658 118 861 846 117 1 161 Fragments arranged by size: 861 846 658 161 118 117 106 1 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 981 1489 2868 Size: 981 508 1379 Fragments arranged by size: 1379 981 508 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 238 270 1011 1043 1262 1294 1524 1556 Size: 238 32 741 32 219 32 230 32 Cuts at: 1556 2248 2280 2368 2400 2840 2868 Size: 692 32 88 32 440 28 Fragments arranged by size: 741 692 440 238 230 219 88 32 32 32 32 32 32 28 HincII GTy'rAC Cuts at: 0 656 2868 Size: 656 2212 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 943 1522 1789 2868 Size: 943 579 267 1079 Fragments arranged by size: 1079 943 579 267 MscI TGG'CCA Cuts at: 0 4 193 427 1297 2089 2364 2868 Size: 4 189 234 870 792 275 504 Fragments arranged by size: 870 792 504 275 234 189 4 MslI CAynn'nnrTG Cuts at: 0 1585 2868 Size: 1585 1283 MspA1I CmG'CkG Cuts at: 0 88 796 1085 1405 1515 2325 2868 Size: 88 708 289 320 110 810 543 Fragments arranged by size: 810 708 543 320 289 110 88 NcoI C'CATG_G Cuts at: 0 935 2868 Size: 935 1933 NdeI CA'TA_TG Cuts at: 0 284 2868 Size: 284 2584 NheI G'CTAG_C Cuts at: 0 1480 2868 Size: 1480 1388 NsiI A_TGCA'T Cuts at: 0 34 2868 Size: 34 2834 NspI r_CATG'y Cuts at: 0 392 844 2868 Size: 392 452 2024 Fragments arranged by size: 2024 452 392 PasI CC'CwG_GG Cuts at: 0 1555 2868 Size: 1555 1313 PciI A'CATG_T Cuts at: 0 388 2868 Size: 388 2480 PflMI CCAn_nnn'nTGG Cuts at: 0 276 630 2148 2868 Size: 276 354 1518 720 Fragments arranged by size: 1518 720 354 276 PpuMI rG'GwC_Cy Cuts at: 0 106 1743 2589 2868 Size: 106 1637 846 279 Fragments arranged by size: 1637 846 279 106 PshAI GACnn'nnGTC Cuts at: 0 1345 2868 Size: 1345 1523 PspOMI G'GGCC_C Cuts at: 0 763 2706 2868 Size: 763 1943 162 Fragments arranged by size: 1943 763 162 PstI C_TGCA'G Cuts at: 0 2552 2597 2868 Size: 2552 45 271 Fragments arranged by size: 2552 271 45 PvuII CAG'CTG Cuts at: 0 796 1085 1405 1515 2868 Size: 796 289 320 110 1353 Fragments arranged by size: 1353 796 320 289 110 SacI G_AGCT'C Cuts at: 0 1001 2546 2626 2726 2868 Size: 1001 1545 80 100 142 Fragments arranged by size: 1545 1001 142 100 80 SalI G'TCGA_C Cuts at: 0 654 2868 Size: 654 2214 SapI GCTCTTCn'nnn_ Cuts at: 0 1232 2868 Size: 1232 1636 SbfI CC_TGCA'GG Cuts at: 0 2552 2868 Size: 2552 316 ScaI AGT'ACT Cuts at: 0 174 2868 Size: 174 2694 SfcI C'TryA_G Cuts at: 0 2548 2593 2868 Size: 2548 45 275 Fragments arranged by size: 2548 275 45 SmlI C'TyrA_G Cuts at: 0 604 1042 2868 Size: 604 438 1826 Fragments arranged by size: 1826 604 438 SphI G_CATG'C Cuts at: 0 844 2868 Size: 844 2024 StuI AGG'CCT Cuts at: 0 640 2868 Size: 640 2228 StyI C'CwwG_G Cuts at: 0 878 935 1739 2868 Size: 878 57 804 1129 Fragments arranged by size: 1129 878 804 57 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 326 622 1386 2227 2737 2868 Size: 326 296 764 841 510 131 Fragments arranged by size: 841 764 510 326 296 131 TatI w'GTAC_w Cuts at: 0 172 2868 Size: 172 2696 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 465 497 2820 2852 2868 Size: 465 32 2323 32 16 Fragments arranged by size: 2323 465 32 32 16 XmnI GAAnn'nnTTC Cuts at: 0 964 1549 1621 2868 Size: 964 585 72 1247 Fragments arranged by size: 1247 964 585 72 ZraI GAC'GTC Cuts at: 0 2851 2868 Size: 2851 17 Enzymes that do cut: AatII AccI AcuI AflIII AhdI AleI AlfI AlwNI ApaI ApoI BanI BanII BbsI BbvCI BciVI BfrBI BglII Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaXI BseRI BseYI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrBI BsrDI BstAPI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraIII EaeI EarI EcoICRI Eco57MI EcoO109I FalI Hin4I HincII MmeI MscI MslI MspA1I NcoI NdeI NheI NsiI NspI PasI PciI PflMI PpuMI PshAI PspOMI PstI PvuII SacI SalI SapI SbfI ScaI SfcI SmlI SphI StuI StyI TaqII TatI TstI XmnI ZraI Enzymes that do not cut: AarI Acc65I AclI AfeI AflII AgeI AloI ApaLI AscI AseI AsiSI AvaI AvrII BaeI BamHI BbeI BcgI BclI BglI BlpI BmgBI BsaAI BsaBI BsaWI BsiEI BsiWI BspEI BsrFI BsrGI BssHII BssSI BstBI BstZ17I ClaI CspCI DraI DrdI EagI EciI EcoNI EcoRI EcoRV FseI FspI FspAI HaeII HindIII HpaI KasI KpnI MfeI MluI NaeI NarI NgoMIV NotI NruI PacI PfoI PmeI PmlI PpiI PsiI PspXI PsrI PvuI RsrII SacII SanDI SexAI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SspI SwaI Tth111I XbaI XcmI XhoI XmaI