FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1576, 145 aa 1>>>pF1KE1576 145 - 145 aa - 145 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1258+/-0.00023; mu= 13.9609+/- 0.015 mean_var=78.1300+/-15.501, 0's: 0 Z-trim(123.0): 32 B-trim: 57 in 1/57 Lambda= 0.145099 statistics sampled from 42068 (42108) to 42068 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.494), width: 16 Scan time: 5.760 The best scores are: opt bits E(85289) NP_009059 (OMIM: 605141) immunoglobulin iota chain ( 145) 1023 222.1 2.5e-58 NP_001290438 (OMIM: 605141) immunoglobulin iota ch ( 144) 888 193.8 8e-50 NP_037510 (OMIM: 605017) pre-B lymphocyte protein ( 123) 288 68.2 4.6e-12 >>NP_009059 (OMIM: 605141) immunoglobulin iota chain iso (145 aa) initn: 1023 init1: 1023 opt: 1023 Z-score: 1168.2 bits: 222.1 E(85289): 2.5e-58 Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145) 10 20 30 40 50 60 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR 70 80 90 100 110 120 130 140 pF1KE1 SSEKEEREREWEEEMEPTAARTRVP ::::::::::::::::::::::::: NP_009 SSEKEEREREWEEEMEPTAARTRVP 130 140 >>NP_001290438 (OMIM: 605141) immunoglobulin iota chain (144 aa) initn: 888 init1: 888 opt: 888 Z-score: 1015.5 bits: 193.8 E(85289): 8e-50 Smith-Waterman score: 888; 91.5% identity (92.3% similar) in 142 aa overlap (4-145:3-144) 10 20 30 40 50 60 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR :: .: : ::::::::::::::::::::::::::::::::::::::::: NP_001 MSAPCPGLLSCSCCLSTAQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR 60 70 80 90 100 110 130 140 pF1KE1 SSEKEEREREWEEEMEPTAARTRVP ::::::::::::::::::::::::: NP_001 SSEKEEREREWEEEMEPTAARTRVP 120 130 140 >>NP_037510 (OMIM: 605017) pre-B lymphocyte protein 3 pr (123 aa) initn: 272 init1: 236 opt: 288 Z-score: 337.6 bits: 68.2 E(85289): 4.6e-12 Smith-Waterman score: 288; 47.0% identity (67.0% similar) in 100 aa overlap (20-118:19-118) 10 20 30 40 50 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDH-DIGVYSVYWYQQ : :: : :. : . .:.::: .: : :.: :::: NP_037 MACRCLSFLLMGTFLSVSQTVLAQLDALLVFPGQVAQLSCTLSPQHVTIRDYGVSWYQQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 RPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGA : : ::.:: : :. :. . ..: :::..:: :.: :.:: .::::.: :::..: NP_037 RAGSAPRYLLYYRSEEDHHRPADIPDRFSAAKDEAHNACVLTISPVQPEDDADYYCSVGY 60 70 80 90 100 110 120 130 140 pF1KE1 RSSEKEEREREWEEEMEPTAARTRVP NP_037 GFSP 120 145 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:32:42 2016 done: Mon Nov 7 03:32:43 2016 Total Scan time: 5.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]