FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1576, 145 aa 1>>>pF1KE1576 145 - 145 aa - 145 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3956+/-0.000501; mu= 12.5356+/- 0.030 mean_var=75.6684+/-15.015, 0's: 0 Z-trim(115.7): 27 B-trim: 7 in 1/52 Lambda= 0.147441 statistics sampled from 16285 (16311) to 16285 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.501), width: 16 Scan time: 1.910 The best scores are: opt bits E(32554) CCDS13798.1 VPREB1 gene_id:7441|Hs108|chr22 ( 145) 1023 225.4 9.5e-60 CCDS77657.1 VPREB1 gene_id:7441|Hs108|chr22 ( 144) 888 196.7 4.2e-51 CCDS13813.1 VPREB3 gene_id:29802|Hs108|chr22 ( 123) 288 69.0 9.7e-13 >>CCDS13798.1 VPREB1 gene_id:7441|Hs108|chr22 (145 aa) initn: 1023 init1: 1023 opt: 1023 Z-score: 1186.1 bits: 225.4 E(32554): 9.5e-60 Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145) 10 20 30 40 50 60 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR 70 80 90 100 110 120 130 140 pF1KE1 SSEKEEREREWEEEMEPTAARTRVP ::::::::::::::::::::::::: CCDS13 SSEKEEREREWEEEMEPTAARTRVP 130 140 >>CCDS77657.1 VPREB1 gene_id:7441|Hs108|chr22 (144 aa) initn: 888 init1: 888 opt: 888 Z-score: 1031.0 bits: 196.7 E(32554): 4.2e-51 Smith-Waterman score: 888; 91.5% identity (92.3% similar) in 142 aa overlap (4-145:3-144) 10 20 30 40 50 60 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR :: .: : ::::::::::::::::::::::::::::::::::::::::: CCDS77 MSAPCPGLLSCSCCLSTAQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQR 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR 60 70 80 90 100 110 130 140 pF1KE1 SSEKEEREREWEEEMEPTAARTRVP ::::::::::::::::::::::::: CCDS77 SSEKEEREREWEEEMEPTAARTRVP 120 130 140 >>CCDS13813.1 VPREB3 gene_id:29802|Hs108|chr22 (123 aa) initn: 272 init1: 236 opt: 288 Z-score: 342.2 bits: 69.0 E(32554): 9.7e-13 Smith-Waterman score: 288; 47.0% identity (67.0% similar) in 100 aa overlap (20-118:19-118) 10 20 30 40 50 pF1KE1 MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDH-DIGVYSVYWYQQ : :: : :. : . .:.::: .: : :.: :::: CCDS13 MACRCLSFLLMGTFLSVSQTVLAQLDALLVFPGQVAQLSCTLSPQHVTIRDYGVSWYQQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 RPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGA : : ::.:: : :. :. . ..: :::..:: :.: :.:: .::::.: :::..: CCDS13 RAGSAPRYLLYYRSEEDHHRPADIPDRFSAAKDEAHNACVLTISPVQPEDDADYYCSVGY 60 70 80 90 100 110 120 130 140 pF1KE1 RSSEKEEREREWEEEMEPTAARTRVP CCDS13 GFSP 120 145 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:32:42 2016 done: Mon Nov 7 03:32:42 2016 Total Scan time: 1.910 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]