FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1131, 259 aa 1>>>pF1KE1131 259 - 259 aa - 259 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1034+/-0.000407; mu= 6.6620+/- 0.025 mean_var=109.1229+/-22.395, 0's: 0 Z-trim(114.6): 7 B-trim: 1569 in 2/53 Lambda= 0.122777 statistics sampled from 24492 (24495) to 24492 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.287), width: 16 Scan time: 7.330 The best scores are: opt bits E(85289) NP_060937 (OMIM: 610675) vesicle transport protein ( 259) 1633 299.7 3.3e-81 XP_016882464 (OMIM: 610675) PREDICTED: vesicle tra ( 259) 1625 298.3 8.9e-81 XP_016882465 (OMIM: 610675) PREDICTED: vesicle tra ( 189) 1169 217.5 1.4e-56 >>NP_060937 (OMIM: 610675) vesicle transport protein USE (259 aa) initn: 1633 init1: 1633 opt: 1633 Z-score: 1578.8 bits: 299.7 E(85289): 3.3e-81 Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE1 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII 190 200 210 220 230 240 250 pF1KE1 VCFIFISMILFIRIMPKLK ::::::::::::::::::: NP_060 VCFIFISMILFIRIMPKLK 250 >>XP_016882464 (OMIM: 610675) PREDICTED: vesicle transpo (259 aa) initn: 1625 init1: 1625 opt: 1625 Z-score: 1571.2 bits: 298.3 E(85289): 8.9e-81 Smith-Waterman score: 1625; 99.6% identity (99.6% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE1 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: XP_016 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII 190 200 210 220 230 240 250 pF1KE1 VCFIFISMILFIRIMPKLK ::::::::::::::::::: XP_016 VCFIFISMILFIRIMPKLK 250 >>XP_016882465 (OMIM: 610675) PREDICTED: vesicle transpo (189 aa) initn: 1169 init1: 1169 opt: 1169 Z-score: 1136.8 bits: 217.5 E(85289): 1.4e-56 Smith-Waterman score: 1169; 99.5% identity (99.5% similar) in 189 aa overlap (71-259:1-189) 50 60 70 80 90 100 pF1KE1 DMLQALKVHASKPASEVINEYSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTAR :::::::::::::::::::::::::::::: XP_016 MLQAEKLTSSSEKALANQFLAPGRVPTTAR 10 20 30 110 120 130 140 150 160 pF1KE1 ERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDL ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: XP_016 ERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDL 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE1 VLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESE 100 110 120 130 140 150 230 240 250 pF1KE1 RLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK ::::::::::::::::::::::::::::::::::::::: XP_016 RLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK 160 170 180 259 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:34:39 2016 done: Mon Nov 7 03:34:40 2016 Total Scan time: 7.330 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]