FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6128, 142 aa
  1>>>pF1KE6128 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1771+/-0.000237; mu= 8.3875+/- 0.015
 mean_var=89.7842+/-17.644, 0's: 0 Z-trim(123.6): 1  B-trim: 0 in 0/59
 Lambda= 0.135355
 statistics sampled from 43677 (43683) to 43677 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.512), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(85289)
NP_064628 (OMIM: 607046) mitochondrial import rece ( 142)  926 189.3 1.8e-48


>>NP_064628 (OMIM: 607046) mitochondrial import receptor  (142 aa)
 initn: 926 init1: 926 opt: 926  Z-score: 991.3  bits: 189.3 E(85289): 1.8e-48
Smith-Waterman score: 926; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE6 MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 SAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQIL
               70        80        90       100       110       120

              130       140  
pF1KE6 LGPNTGLSGGMPGALPSLPGKI
       ::::::::::::::::::::::
NP_064 LGPNTGLSGGMPGALPSLPGKI
              130       140  




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:41:48 2016 done: Tue Nov  8 09:41:49 2016
 Total Scan time:  3.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]