FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6128, 142 aa
  1>>>pF1KE6128 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1914+/-0.000525; mu= 8.4622+/- 0.032
 mean_var=86.7807+/-17.120, 0's: 0 Z-trim(115.9): 5  B-trim: 0 in 0/55
 Lambda= 0.137677
 statistics sampled from 16460 (16462) to 16460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.506), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS13975.1 TOMM22 gene_id:56993|Hs108|chr22       ( 142)  926 192.3 8.7e-50


>>CCDS13975.1 TOMM22 gene_id:56993|Hs108|chr22            (142 aa)
 initn: 926 init1: 926 opt: 926  Z-score: 1007.3  bits: 192.3 E(32554): 8.7e-50
Smith-Waterman score: 926; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE6 MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQIL
               70        80        90       100       110       120

              130       140  
pF1KE6 LGPNTGLSGGMPGALPSLPGKI
       ::::::::::::::::::::::
CCDS13 LGPNTGLSGGMPGALPSLPGKI
              130       140  




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:41:48 2016 done: Tue Nov  8 09:41:48 2016
 Total Scan time:  1.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]