Result of FASTA (ccds) for
pFN21AB8351
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8351, 274 aa
1>>>pF1KB8351 274 - 274 aa - 274 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6476+/-0.000802; mu= 8.7999+/- 0.048
mean_var=93.9715+/-18.928, 0's: 0 Z-trim(109.8): 31 B-trim: 0 in 0/51
Lambda= 0.132305
statistics sampled from 11135 (11161) to 11135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.343), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS7723.1 TOLLIP gene_id:54472|Hs108|chr11 ( 274) 1856 364.0 6.3e-101
CCDS81532.1 TOLLIP gene_id:54472|Hs108|chr11 ( 205) 1416 280.0 9.4e-76
CCDS81534.1 TOLLIP gene_id:54472|Hs108|chr11 ( 213) 1033 206.9 9.9e-54
CCDS81533.1 TOLLIP gene_id:54472|Hs108|chr11 ( 80) 390 84.0 3.7e-17
>>CCDS7723.1 TOLLIP gene_id:54472|Hs108|chr11 (274 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1925.4 bits: 364.0 E(32554): 6.3e-101
Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
190 200 210 220 230 240
250 260 270
pF1KB8 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
::::::::::::::::::::::::::::::::::
CCDS77 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
250 260 270
>>CCDS81532.1 TOLLIP gene_id:54472|Hs108|chr11 (205 aa)
initn: 1416 init1: 1416 opt: 1416 Z-score: 1473.5 bits: 280.0 E(32554): 9.4e-76
Smith-Waterman score: 1416; 100.0% identity (100.0% similar) in 205 aa overlap (70-274:1-205)
40 50 60 70 80 90
pF1KB8 AQQLQYGGAVGTVGRLNITVVQAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPR
::::::::::::::::::::::::::::::
CCDS81 MTRMDPYCRLRLGYAVYETPTAHNGAKNPR
10 20 30
100 110 120 130 140 150
pF1KB8 WNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQG
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 DDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALP
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 PAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
160 170 180 190 200
>>CCDS81534.1 TOLLIP gene_id:54472|Hs108|chr11 (213 aa)
initn: 1033 init1: 1033 opt: 1033 Z-score: 1078.1 bits: 206.9 E(32554): 9.9e-54
Smith-Waterman score: 1289; 77.7% identity (77.7% similar) in 274 aa overlap (1-274:1-213)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
:
CCDS81 Q-----------------------------------------------------------
130 140 150 160 170 180
pF1KB8 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 --RAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV
70 80 90 100 110
190 200 210 220 230 240
pF1KB8 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM
120 130 140 150 160 170
250 260 270
pF1KB8 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
::::::::::::::::::::::::::::::::::
CCDS81 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP
180 190 200 210
>>CCDS81533.1 TOLLIP gene_id:54472|Hs108|chr11 (80 aa)
initn: 390 init1: 390 opt: 390 Z-score: 421.5 bits: 84.0 E(32554): 3.7e-17
Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61)
10 20 30 40 50 60
pF1KB8 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF
:
CCDS81 QGCPLSVAPAWCPWPCPRPP
70 80
274 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:35:51 2016 done: Mon Nov 7 03:35:51 2016
Total Scan time: 2.430 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]