(Circular) (Six-base) MAPSORT of: pFN21AE0161.seq Check: 5858 from: 1 to: 5500 pFN21AE0161 5500 bp With 182 enzymes: SgfI * October 20, 2009 10:45 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2192 2192 Size: 5500 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2430 3310 278 Size: 53 83 186 936 894 880 2468 Fragments arranged by size: 2468 936 894 880 186 83 53 AccI GT'mk_AC Cuts at: 1937 2843 1937 Size: 906 4594 Acc65I G'GTAC_C Cuts at: 2821 2821 Size: 5500 AclI AA'CG_TT Cuts at: 1563 3627 4000 1563 Size: 2064 373 3063 Fragments arranged by size: 3063 2064 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2220 3563 4947 5215 1632 Size: 588 1343 1384 268 1917 Fragments arranged by size: 1917 1384 1343 588 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5303 AflIII A'CryG_T Cuts at: 1203 4399 5376 1203 Size: 3196 977 1327 Fragments arranged by size: 3196 1327 977 AgeI A'CCGG_T Cuts at: 4331 4331 Size: 5500 AhdI GACnn_n'nnGTC Cuts at: 2230 4229 2230 Size: 1999 3501 AleI CACnn'nnGTG Cuts at: 1166 2540 1166 Size: 1374 4126 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5500 AlwNI CAG_nnn'CTG Cuts at: 2209 3243 4815 2209 Size: 1034 1572 2894 Fragments arranged by size: 2894 1572 1034 ApaI G_GGCC'C Cuts at: 2345 2345 Size: 5500 ApaLI G'TGCA_C Cuts at: 3557 4713 3557 Size: 1156 4344 ApoI r'AATT_y Cuts at: 1493 2809 3035 3187 5296 1493 Size: 1316 226 152 2109 1697 Fragments arranged by size: 2109 1697 1316 226 152 AseI AT'TA_AT Cuts at: 160 1032 4054 160 Size: 872 3022 1606 Fragments arranged by size: 3022 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5500 AvaI C'yCGr_G Cuts at: 1870 1943 2825 1870 Size: 73 882 4545 Fragments arranged by size: 4545 882 73 BamHI G'GATC_C Cuts at: 2443 2830 3197 2443 Size: 387 367 4746 Fragments arranged by size: 4746 387 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2176 2821 4276 618 Size: 325 217 627 389 645 1455 1842 Fragments arranged by size: 1842 1455 645 627 389 325 217 BanII G_rGCy'C Cuts at: 1391 2345 2819 1391 Size: 954 474 4072 Fragments arranged by size: 4072 954 474 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2226 2257 928 Size: 971 327 31 4171 Fragments arranged by size: 4171 971 327 31 BbvCI CC'TCA_GC Cuts at: 2120 2120 Size: 5500 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3691 3725 1903 Size: 34 1754 34 3678 Fragments arranged by size: 3678 1754 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3392 4602 3392 Size: 1210 4290 BclI T'GATC_A Cuts at: 1548 1548 Size: 5500 BfrBI ATG'CAT Cuts at: 2499 2499 Size: 5500 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4111 136 Size: 107 122 71 631 605 2439 1525 Fragments arranged by size: 2439 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5495 5495 Size: 5500 BlpI GC'TnA_GC Cuts at: 2917 2917 Size: 5500 Bme1580I G_kGCm'C Cuts at: 1790 2181 2345 3561 4717 1790 Size: 391 164 1216 1156 2573 Fragments arranged by size: 2573 1216 1156 391 164 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5500 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3231 4189 442 Size: 416 53 83 399 24 1814 958 1753 Fragments arranged by size: 1814 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5500 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2674 2674 Size: 5500 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2091 2644 4160 1239 Size: 852 553 1516 2579 Fragments arranged by size: 2579 1516 852 553 Bpu10I CC'TnA_GC Cuts at: 2120 2120 Size: 5500 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3625 4490 4788 3625 Size: 865 298 4337 Fragments arranged by size: 4337 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2597 4163 882 Size: 617 1098 1566 2219 Fragments arranged by size: 2219 1566 1098 617 BsaAI yAC'GTr Cuts at: 493 1204 3291 493 Size: 711 2087 2702 Fragments arranged by size: 2702 2087 711 BsaBI GATnn'nnATC Cuts at: 5494 5494 Size: 5500 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2427 3307 3689 4324 Size: 53 83 186 936 894 880 382 635 Cuts at: 4324 275 Size: 1451 Fragments arranged by size: 1451 936 894 880 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3933 4331 4605 4752 5163 3933 Size: 398 274 147 411 4270 Fragments arranged by size: 4270 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5275 Fragments arranged by size: 5275 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2218 1186 Size: 1032 4468 BseYI C'CCAG_C Cuts at: 4703 5199 4703 Size: 496 5004 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4927 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2950 3711 4739 1540 Size: 275 186 949 761 1028 2301 Fragments arranged by size: 2301 1028 949 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3561 3646 4717 3561 Size: 85 1071 4344 Fragments arranged by size: 4344 1071 85 BsmI GAATG_Cn' Cuts at: 2614 3011 3104 2614 Size: 397 93 5010 Fragments arranged by size: 5010 397 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2181 2345 2819 3561 3646 4717 1391 Size: 399 391 164 474 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 474 399 391 164 85 BspEI T'CCGG_A Cuts at: 5163 5163 Size: 5500 BspHI T'CATG_A Cuts at: 3389 5119 3389 Size: 1730 3770 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2192 2855 844 Size: 1348 663 3489 Fragments arranged by size: 3489 1348 663 BsrBI CCG'CTC Cuts at: 1394 1823 3387 1394 Size: 429 1564 3507 Fragments arranged by size: 3507 1564 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3995 4169 65 Size: 1183 2747 174 1396 Fragments arranged by size: 2747 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2606 4144 4331 1700 Size: 110 796 1538 187 2869 Fragments arranged by size: 2869 1538 796 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5500 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5500 BssSI C'ACGA_G Cuts at: 3560 4572 3560 Size: 1012 4488 BstAPI GCAn_nnn'nTGC Cuts at: 794 2042 794 Size: 1248 4252 BstBI TT'CG_AA Cuts at: 4304 4304 Size: 5500 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5500 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 5500 BstYI r'GATC_y Cuts at: 1972 2443 2641 2830 3197 3582 3599 5051 5137 Size: 471 198 189 367 385 17 1452 86 Cuts at: 5137 5149 5495 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 471 385 367 346 198 189 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4948 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4761 Fragments arranged by size: 4761 683 56 BtsI GCAGTG_nn' Cuts at: 2716 3016 3810 3830 2716 Size: 300 794 20 4386 Fragments arranged by size: 4386 794 300 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5500 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5465 DraI TTT'AAA Cuts at: 2804 2804 Size: 5500 DraIII CAC_nnn'GTG Cuts at: 2164 2164 Size: 5500 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2360 4507 809 Size: 507 1044 2147 1802 Fragments arranged by size: 2147 1802 1044 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2286 2758 2947 Size: 54 1425 50 275 18 456 472 189 Cuts at: 2947 3836 5465 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 472 456 275 189 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2947 1537 Size: 275 1135 4090 Fragments arranged by size: 4090 1135 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3430 1353 Size: 2077 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4087 4461 4607 387 Size: 1064 138 2498 374 146 1280 Fragments arranged by size: 2498 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2091 2220 2644 3563 4160 4947 5215 Size: 393 459 129 424 919 597 787 268 Cuts at: 5215 1239 Size: 1524 Fragments arranged by size: 1524 919 787 597 459 424 393 268 129 EcoO109I rG'GnC_Cy Cuts at: 2341 2341 Size: 5500 EcoRI G'AATT_C Cuts at: 2809 3187 2809 Size: 378 5122 EcoRV GAT'ATC Cuts at: 2633 2633 Size: 5500 FspI TGC'GCA Cuts at: 4006 4006 Size: 5500 HaeII r_GCGC'y Cuts at: 1678 4647 1678 Size: 2969 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2008 2040 2216 2248 4141 Size: 32 135 32 436 32 176 32 1893 Cuts at: 4141 4173 4215 4247 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1893 436 176 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2101 2844 3090 669 Size: 988 281 163 743 246 3079 Fragments arranged by size: 3079 988 743 281 246 163 HindIII A'AGCT_T Cuts at: 748 2527 748 Size: 1779 3721 HpaI GTT'AAC Cuts at: 3090 3090 Size: 5500 KpnI G_GTAC'C Cuts at: 2825 2825 Size: 5500 MfeI C'AATT_G Cuts at: 3099 3099 Size: 5500 MluI A'CGCG_T Cuts at: 5376 5376 Size: 5500 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2514 4614 4798 1305 Size: 1209 2100 184 2007 Fragments arranged by size: 2100 2007 1209 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2760 10 Size: 54 1425 343 928 2750 Fragments arranged by size: 2750 1425 928 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2540 3458 3817 3976 518 Size: 648 843 531 918 359 159 2042 Fragments arranged by size: 2042 918 843 648 531 359 159 MspA1I CmG'CkG Cuts at: 1606 2916 3593 4741 4986 1606 Size: 1310 677 1148 245 2120 Fragments arranged by size: 2120 1310 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4948 NdeI CA'TA_TG Cuts at: 387 2585 387 Size: 2198 3302 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5500 NotI GC'GGCC_GC Cuts at: 2947 2947 Size: 5500 NsiI A_TGCA'T Cuts at: 2501 2501 Size: 5500 NspI r_CATG'y Cuts at: 1132 1229 2058 2858 4403 1132 Size: 97 829 800 1545 2229 Fragments arranged by size: 2229 1545 829 800 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5500 PciI A'CATG_T Cuts at: 4399 4399 Size: 5500 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5500 PmeI GTTT'AAAC Cuts at: 2804 2804 Size: 5500 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3569 3601 5082 5114 3569 Size: 32 1481 32 3955 Fragments arranged by size: 3955 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5500 PsiI TTA'TAA Cuts at: 3070 3070 Size: 5500 PspOMI G'GGCC_C Cuts at: 2341 2341 Size: 5500 PstI C_TGCA'G Cuts at: 830 2852 830 Size: 2022 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5500 SalI G'TCGA_C Cuts at: 1936 2842 1936 Size: 906 4594 SbfI CC_TGCA'GG Cuts at: 2852 2852 Size: 5500 ScaI AGT'ACT Cuts at: 3748 5460 3748 Size: 1712 3788 SexAI A'CCwGG_T Cuts at: 2160 2160 Size: 5500 SfcI C'TryA_G Cuts at: 826 1045 2367 2848 3983 4664 4855 826 Size: 219 1322 481 1135 681 191 1471 Fragments arranged by size: 1471 1322 1135 681 481 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5500 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5500 SmaI CCC'GGG Cuts at: 1872 2827 1872 Size: 955 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3604 4505 4767 820 Size: 197 926 1661 901 262 1553 Fragments arranged by size: 1661 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3291 493 Size: 2798 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5500 SphI G_CATG'C Cuts at: 1132 2858 1132 Size: 1726 3774 SspI AAT'ATT Cuts at: 5 52 3424 5 Size: 47 3372 2081 Fragments arranged by size: 3372 2081 47 StuI AGG'CCT Cuts at: 1517 2076 1517 Size: 559 4941 StyI C'CwwG_G Cuts at: 513 1065 2448 2939 513 Size: 552 1383 491 3074 Fragments arranged by size: 3074 1383 552 491 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3527 3544 3697 3882 4327 325 Size: 1255 1947 17 153 185 445 1498 Fragments arranged by size: 1947 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3746 5458 96 Size: 274 80 33 51 1443 1769 1712 138 Fragments arranged by size: 1769 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5460 5492 5460 Size: 32 5468 Tth111I GACn'n_nGTC Cuts at: 1316 2096 1316 Size: 780 4720 XbaI T'CTAG_A Cuts at: 2836 2836 Size: 5500 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2497 2696 2768 2497 Size: 199 72 5229 Fragments arranged by size: 5229 199 72 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5500 XmaI C'CCGG_G Cuts at: 1870 2825 1870 Size: 955 4545 XmnI GAAnn'nnTTC Cuts at: 3629 3629 Size: 5500 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2428 3308 276 Size: 53 83 186 936 894 880 2468 Fragments arranged by size: 2468 936 894 880 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BsiWI BsmBI BstZ17I Bsu36I EcoICRI EcoNI FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI