(Circular) (Six-base) MAPSORT of: pFN21AE0412.seq Check: 1833 from: 1 to: 5434 pFN21AE0412 5434 bp With 182 enzymes: SgfI * October 20, 2009 10:47 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3244 278 Size: 53 83 186 936 1708 2468 Fragments arranged by size: 2468 1708 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2777 1937 Size: 840 4594 Acc65I G'GTAC_C Cuts at: 2664 2755 2664 Size: 91 5343 AclI AA'CG_TT Cuts at: 1563 3561 3934 1563 Size: 1998 373 3063 Fragments arranged by size: 3063 1998 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3497 4881 5149 1632 Size: 1865 1384 268 1917 Fragments arranged by size: 1917 1865 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5237 AflIII A'CryG_T Cuts at: 1203 2348 4333 5310 1203 Size: 1145 1985 977 1327 Fragments arranged by size: 1985 1327 1145 977 AgeI A'CCGG_T Cuts at: 4265 4265 Size: 5434 AhdI GACnn_n'nnGTC Cuts at: 4163 4163 Size: 5434 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5434 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5434 AlwNI CAG_nnn'CTG Cuts at: 3177 4749 3177 Size: 1572 3862 ApaI G_GGCC'C Cuts at: 2051 2076 2110 2051 Size: 25 34 5375 Fragments arranged by size: 5375 34 25 ApaLI G'TGCA_C Cuts at: 3491 4647 3491 Size: 1156 4278 ApoI r'AATT_y Cuts at: 1493 2743 2969 3121 5230 1493 Size: 1250 226 152 2109 1697 Fragments arranged by size: 2109 1697 1250 226 152 AseI AT'TA_AT Cuts at: 160 1032 3988 160 Size: 872 2956 1606 Fragments arranged by size: 2956 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5434 AvaI C'yCGr_G Cuts at: 1870 1943 2759 1870 Size: 73 816 4545 Fragments arranged by size: 4545 816 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2648 2681 2648 Size: 33 5401 BamHI G'GATC_C Cuts at: 2764 3131 2764 Size: 367 5067 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2664 2755 4210 618 Size: 325 217 627 877 91 1455 1842 Fragments arranged by size: 1842 1455 877 627 325 217 91 BanII G_rGCy'C Cuts at: 1391 2051 2076 2110 2136 2753 1391 Size: 660 25 34 26 617 4072 Fragments arranged by size: 4072 660 617 34 26 25 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2665 928 Size: 971 766 3697 Fragments arranged by size: 3697 971 766 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3625 3659 1903 Size: 34 1688 34 3678 Fragments arranged by size: 3678 1688 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3326 4536 3326 Size: 1210 4224 BclI T'GATC_A Cuts at: 1548 1548 Size: 5434 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4045 136 Size: 107 122 71 631 605 2373 1525 Fragments arranged by size: 2373 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5429 5429 Size: 5434 BlpI GC'TnA_GC Cuts at: 2519 2851 2519 Size: 332 5102 Bme1580I G_kGCm'C Cuts at: 1790 2051 2076 2102 2110 2395 3495 4651 1790 Size: 261 25 26 8 285 1100 1156 2573 Fragments arranged by size: 2573 1156 1100 285 261 26 25 8 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5434 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3165 4123 442 Size: 416 53 83 399 24 1748 958 1753 Fragments arranged by size: 1753 1748 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5434 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4094 1239 Size: 2855 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3559 4424 4722 3559 Size: 865 298 4271 Fragments arranged by size: 4271 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2465 4097 882 Size: 617 966 1632 2219 Fragments arranged by size: 2219 1632 966 617 BsaAI yAC'GTr Cuts at: 493 1204 3225 493 Size: 711 2021 2702 Fragments arranged by size: 2702 2021 711 BsaBI GATnn'nnATC Cuts at: 5428 5428 Size: 5434 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2064 3241 3623 4258 Size: 53 83 186 936 531 1177 382 635 Cuts at: 4258 275 Size: 1451 Fragments arranged by size: 1451 1177 936 635 531 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3867 4265 4539 4686 5097 3867 Size: 398 274 147 411 4204 Fragments arranged by size: 4204 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5209 Fragments arranged by size: 5209 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2141 2144 2230 2497 1186 Size: 955 3 86 267 4123 Fragments arranged by size: 4123 955 267 86 3 BseYI C'CCAG_C Cuts at: 2069 2273 2721 4637 5133 2069 Size: 204 448 1916 496 2370 Fragments arranged by size: 2370 1916 496 448 204 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4861 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2058 2884 3645 4673 1540 Size: 275 186 57 826 761 1028 2301 Fragments arranged by size: 2301 1028 826 761 275 186 57 BsiHKAI G_wGCw'C Cuts at: 3495 3580 4651 3495 Size: 85 1071 4278 Fragments arranged by size: 4278 1071 85 BsmI GAATG_Cn' Cuts at: 2945 3038 2945 Size: 93 5341 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2051 2076 2102 2110 2136 2395 2753 Size: 399 261 25 26 8 26 259 358 Cuts at: 2753 3495 3580 4651 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 358 261 259 85 26 26 25 8 BspEI T'CCGG_A Cuts at: 5097 5097 Size: 5434 BspHI T'CATG_A Cuts at: 3323 5053 3323 Size: 1730 3704 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2150 2789 844 Size: 1306 639 3489 Fragments arranged by size: 3489 1306 639 BsrBI CCG'CTC Cuts at: 1394 1823 2518 3321 1394 Size: 429 695 803 3507 Fragments arranged by size: 3507 803 695 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3929 4103 65 Size: 1183 2681 174 1396 Fragments arranged by size: 2681 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2053 2154 4078 4265 1700 Size: 110 243 101 1924 187 2869 Fragments arranged by size: 2869 1924 243 187 110 101 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5434 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5434 BssSI C'ACGA_G Cuts at: 3494 4506 3494 Size: 1012 4422 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5434 BstBI TT'CG_AA Cuts at: 4238 4238 Size: 5434 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5434 BstYI r'GATC_y Cuts at: 1972 2764 3131 3516 3533 4985 5071 5083 5429 Size: 792 367 385 17 1452 86 12 346 Cuts at: 5429 1972 Size: 1977 Fragments arranged by size: 1977 1452 792 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2058 2208 2421 513 Size: 552 939 54 150 213 3526 Fragments arranged by size: 3526 939 552 213 150 54 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2182 487 Size: 683 56 956 3739 Fragments arranged by size: 3739 956 683 56 BtsI GCAGTG_nn' Cuts at: 2950 3744 3764 2950 Size: 794 20 4620 Fragments arranged by size: 4620 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5434 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5399 DraI TTT'AAA Cuts at: 2738 2738 Size: 5434 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4441 809 Size: 507 3125 1802 Fragments arranged by size: 3125 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2029 2055 2418 Size: 54 1425 50 275 18 199 26 363 Cuts at: 2418 2881 3770 5399 8 Size: 463 889 1629 43 Fragments arranged by size: 1629 1425 889 463 363 275 199 54 50 43 26 18 EagI C'GGCC_G Cuts at: 1537 1812 2055 2881 1537 Size: 275 243 826 4090 Fragments arranged by size: 4090 826 275 243 EarI CTCTTCn'nnn_ Cuts at: 1353 3364 1353 Size: 2011 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4021 4395 4541 387 Size: 1064 138 2432 374 146 1280 Fragments arranged by size: 2432 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3497 4094 4881 5149 1239 Size: 393 1865 597 787 268 1524 Fragments arranged by size: 1865 1524 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2047 2106 2107 2526 2717 2047 Size: 59 1 419 191 4764 Fragments arranged by size: 4764 419 191 59 1 EcoRI G'AATT_C Cuts at: 2743 3121 2743 Size: 378 5056 FspI TGC'GCA Cuts at: 3940 3940 Size: 5434 HaeII r_GCGC'y Cuts at: 1678 4581 1678 Size: 2903 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4075 4107 4149 4181 1373 Size: 32 135 32 2503 32 42 32 2626 Fragments arranged by size: 2626 2503 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2338 2778 3024 669 Size: 988 281 400 440 246 3079 Fragments arranged by size: 3079 988 440 400 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5434 HpaI GTT'AAC Cuts at: 3024 3024 Size: 5434 KpnI G_GTAC'C Cuts at: 2668 2759 2668 Size: 91 5343 MfeI C'AATT_G Cuts at: 3033 3033 Size: 5434 MluI A'CGCG_T Cuts at: 5310 5310 Size: 5434 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4548 4732 1305 Size: 3243 184 2007 Fragments arranged by size: 3243 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3612 Fragments arranged by size: 3612 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2201 2597 3392 3751 3910 518 Size: 648 1035 396 795 359 159 2042 Fragments arranged by size: 2042 1035 795 648 396 359 159 MspA1I CmG'CkG Cuts at: 1606 2060 2069 2164 2185 2850 3527 4675 4920 Size: 454 9 95 21 665 677 1148 245 Cuts at: 4920 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 665 454 245 95 21 9 NaeI GCC'GGC Cuts at: 2055 2055 Size: 5434 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3943 Fragments arranged by size: 3943 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5434 NgoMIV G'CCGG_C Cuts at: 2053 2053 Size: 5434 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5434 NotI GC'GGCC_GC Cuts at: 2881 2881 Size: 5434 NspI r_CATG'y Cuts at: 1132 1229 2352 2792 4337 1132 Size: 97 1123 440 1545 2229 Fragments arranged by size: 2229 1545 1123 440 97 PasI CC'CwG_GG Cuts at: 1348 2191 2395 1348 Size: 843 204 4387 Fragments arranged by size: 4387 843 204 PciI A'CATG_T Cuts at: 2348 4333 2348 Size: 1985 3449 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5434 PmeI GTTT'AAAC Cuts at: 2738 2738 Size: 5434 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3503 3535 5016 5048 3503 Size: 32 1481 32 3889 Fragments arranged by size: 3889 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2526 2526 Size: 5434 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5434 PsiI TTA'TAA Cuts at: 3004 3004 Size: 5434 PspOMI G'GGCC_C Cuts at: 2047 2072 2106 2047 Size: 25 34 5375 Fragments arranged by size: 5375 34 25 PstI C_TGCA'G Cuts at: 830 2184 2786 830 Size: 1354 602 3478 Fragments arranged by size: 3478 1354 602 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5434 PvuII CAG'CTG Cuts at: 2185 2185 Size: 5434 SacII CC_GC'GG Cuts at: 2061 2061 Size: 5434 SalI G'TCGA_C Cuts at: 1936 2776 1936 Size: 840 4594 SbfI CC_TGCA'GG Cuts at: 2786 2786 Size: 5434 ScaI AGT'ACT Cuts at: 3682 5394 3682 Size: 1712 3722 SexAI A'CCwGG_T Cuts at: 2667 2667 Size: 5434 SfcI C'TryA_G Cuts at: 826 1045 2180 2782 3917 4598 4789 826 Size: 219 1135 602 1135 681 191 1471 Fragments arranged by size: 1471 1135 1135 681 602 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5434 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5434 SmaI CCC'GGG Cuts at: 1872 2761 1872 Size: 889 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3538 4439 4701 820 Size: 197 926 1595 901 262 1553 Fragments arranged by size: 1595 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3225 493 Size: 2732 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5434 SphI G_CATG'C Cuts at: 1132 2792 1132 Size: 1660 3774 SspI AAT'ATT Cuts at: 5 52 3358 5 Size: 47 3306 2081 Fragments arranged by size: 3306 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5434 StyI C'CwwG_G Cuts at: 513 1065 2004 2112 2873 513 Size: 552 939 108 761 3074 Fragments arranged by size: 3074 939 761 552 108 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2672 3461 3478 3631 3816 4261 325 Size: 1255 1092 789 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1092 789 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3680 5392 96 Size: 274 80 33 51 1443 1703 1712 138 Fragments arranged by size: 1712 1703 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5394 5426 5394 Size: 32 5402 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5434 XbaI T'CTAG_A Cuts at: 2770 2770 Size: 5434 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5434 XmaI C'CCGG_G Cuts at: 1870 2759 1870 Size: 889 4545 XmnI GAAnn'nnTTC Cuts at: 3563 3563 Size: 5434 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3242 276 Size: 53 83 186 936 1708 2468 Fragments arranged by size: 2468 1708 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspXI PsrI RsrII SacI SanDI SapI SfiI SfoI SrfI SwaI XcmI