Result of FASTA (omim) for
pFN21AB6793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6793, 127 aa
1>>>pF1KB6793 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8440+/-0.000323; mu= 8.8061+/- 0.020
mean_var=71.2826+/-13.837, 0's: 0 Z-trim(115.9): 27 B-trim: 786 in 1/54
Lambda= 0.151909
statistics sampled from 26581 (26608) to 26581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.312), width: 16
Scan time: 4.330
The best scores are: opt bits E(85289)
NP_003078 (OMIM: 602998) gamma-synuclein isoform 1 ( 127) 756 174.0 5.6e-44
XP_011530506 (OMIM: 127750,163890,168601,605543) P ( 170) 396 95.2 4.1e-20
XP_011530507 (OMIM: 127750,163890,168601,605543) P ( 170) 396 95.2 4.1e-20
XP_011530509 (OMIM: 127750,163890,168601,605543) P ( 170) 396 95.2 4.1e-20
XP_011530508 (OMIM: 127750,163890,168601,605543) P ( 170) 396 95.2 4.1e-20
XP_011530505 (OMIM: 127750,163890,168601,605543) P ( 170) 396 95.2 4.1e-20
NP_000336 (OMIM: 127750,163890,168601,605543) alph ( 140) 388 93.4 1.2e-19
NP_001139526 (OMIM: 127750,163890,168601,605543) a ( 140) 388 93.4 1.2e-19
XP_016864051 (OMIM: 127750,163890,168601,605543) P ( 140) 388 93.4 1.2e-19
XP_011530510 (OMIM: 127750,163890,168601,605543) P ( 140) 388 93.4 1.2e-19
XP_016864052 (OMIM: 127750,163890,168601,605543) P ( 140) 388 93.4 1.2e-19
NP_001139527 (OMIM: 127750,163890,168601,605543) a ( 140) 388 93.4 1.2e-19
NP_009292 (OMIM: 127750,163890,168601,605543) alph ( 112) 383 92.3 2e-19
NP_001304964 (OMIM: 127750,602569) beta-synuclein ( 104) 341 83.1 1.1e-16
NP_001304966 (OMIM: 127750,602569) beta-synuclein ( 104) 341 83.1 1.1e-16
NP_003076 (OMIM: 127750,602569) beta-synuclein iso ( 134) 342 83.3 1.2e-16
XP_006714979 (OMIM: 127750,602569) PREDICTED: beta ( 134) 342 83.3 1.2e-16
NP_001001502 (OMIM: 127750,602569) beta-synuclein ( 134) 342 83.3 1.2e-16
XP_006714977 (OMIM: 127750,602569) PREDICTED: beta ( 152) 342 83.3 1.3e-16
XP_011532942 (OMIM: 127750,602569) PREDICTED: beta ( 152) 342 83.3 1.3e-16
XP_006714978 (OMIM: 127750,602569) PREDICTED: beta ( 152) 342 83.3 1.3e-16
NP_001317049 (OMIM: 602998) gamma-synuclein isofor ( 126) 325 79.6 1.5e-15
NP_001304963 (OMIM: 127750,602569) beta-synuclein ( 120) 222 57.0 9e-09
NP_001304965 (OMIM: 127750,602569) beta-synuclein ( 120) 222 57.0 9e-09
>>NP_003078 (OMIM: 602998) gamma-synuclein isoform 1 [Ho (127 aa)
initn: 756 init1: 756 opt: 756 Z-score: 910.5 bits: 174.0 E(85289): 5.6e-44
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
70 80 90 100 110 120
pF1KB6 EAQSGGD
:::::::
NP_003 EAQSGGD
>>XP_011530506 (OMIM: 127750,163890,168601,605543) PREDI (170 aa)
initn: 569 init1: 381 opt: 396 Z-score: 482.1 bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::.. :. :::..:..:: :::: : .::...: :.:..: . :. . ::..:.:
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
70 80 90 100 110
pF1KB6 EAQSGGD
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
120 130 140 150 160 170
>>XP_011530507 (OMIM: 127750,163890,168601,605543) PREDI (170 aa)
initn: 569 init1: 381 opt: 396 Z-score: 482.1 bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::.. :. :::..:..:: :::: : .::...: :.:..: . :. . ::..:.:
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
70 80 90 100 110
pF1KB6 EAQSGGD
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
120 130 140 150 160 170
>>XP_011530509 (OMIM: 127750,163890,168601,605543) PREDI (170 aa)
initn: 569 init1: 381 opt: 396 Z-score: 482.1 bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::.. :. :::..:..:: :::: : .::...: :.:..: . :. . ::..:.:
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
70 80 90 100 110
pF1KB6 EAQSGGD
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
120 130 140 150 160 170
>>XP_011530508 (OMIM: 127750,163890,168601,605543) PREDI (170 aa)
initn: 569 init1: 381 opt: 396 Z-score: 482.1 bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::.. :. :::..:..:: :::: : .::...: :.:..: . :. . ::..:.:
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
70 80 90 100 110
pF1KB6 EAQSGGD
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
120 130 140 150 160 170
>>XP_011530505 (OMIM: 127750,163890,168601,605543) PREDI (170 aa)
initn: 569 init1: 381 opt: 396 Z-score: 482.1 bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
::.. :. :::..:..:: :::: : .::...: :.:..: . :. . ::..:.:
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
70 80 90 100 110
pF1KB6 EAQSGGD
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
120 130 140 150 160 170
>>NP_000336 (OMIM: 127750,163890,168601,605543) alpha-sy (140 aa)
initn: 569 init1: 381 opt: 388 Z-score: 474.0 bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
NP_000 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
::.. :. :::..:..:: :::: : .::...: :.:..: . .:::.
NP_000 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
70 80 90 100 110 120
120
pF1KB6 VAEEAQSGGD
NP_000 DNEAYEMPSEEGYQDYEPEA
130 140
>>NP_001139526 (OMIM: 127750,163890,168601,605543) alpha (140 aa)
initn: 569 init1: 381 opt: 388 Z-score: 474.0 bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
NP_001 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
::.. :. :::..:..:: :::: : .::...: :.:..: . .:::.
NP_001 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
70 80 90 100 110 120
120
pF1KB6 VAEEAQSGGD
NP_001 DNEAYEMPSEEGYQDYEPEA
130 140
>>XP_016864051 (OMIM: 127750,163890,168601,605543) PREDI (140 aa)
initn: 569 init1: 381 opt: 388 Z-score: 474.0 bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_016 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
::.. :. :::..:..:: :::: : .::...: :.:..: . .:::.
XP_016 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
70 80 90 100 110 120
120
pF1KB6 VAEEAQSGGD
XP_016 DNEAYEMPSEEGYQDYEPEA
130 140
>>XP_011530510 (OMIM: 127750,163890,168601,605543) PREDI (140 aa)
initn: 569 init1: 381 opt: 388 Z-score: 474.0 bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)
10 20 30 40 50 60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
:::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
::.. :. :::..:..:: :::: : .::...: :.:..: . .:::.
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
70 80 90 100 110 120
120
pF1KB6 VAEEAQSGGD
XP_011 DNEAYEMPSEEGYQDYEPEA
130 140
127 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:01:34 2016 done: Sat Nov 5 00:01:34 2016
Total Scan time: 4.330 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]