FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6428, 323 aa
  1>>>pF1KB6428 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8134+/-0.000954; mu= 9.3395+/- 0.057
 mean_var=137.4246+/-27.952, 0's: 0 Z-trim(109.5): 131  B-trim: 3 in 1/51
 Lambda= 0.109406
 statistics sampled from 10780 (10939) to 10780 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.336), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS54332.1 SH3YL1 gene_id:26751|Hs108|chr2        ( 323) 2106 343.8 1.1e-94
CCDS42646.2 SH3YL1 gene_id:26751|Hs108|chr2        ( 342) 1701 279.9   2e-75
CCDS62841.1 SH3YL1 gene_id:26751|Hs108|chr2        ( 227) 1490 246.4 1.6e-65
CCDS62842.1 SH3YL1 gene_id:26751|Hs108|chr2        ( 246) 1085 182.5 2.9e-46


>>CCDS54332.1 SH3YL1 gene_id:26751|Hs108|chr2             (323 aa)
 initn: 2106 init1: 2106 opt: 2106  Z-score: 1813.5  bits: 343.8 E(32554): 1.1e-94
Smith-Waterman score: 2106; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KB6 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KPLSRPQQSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KPLSRPQQSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSH
              250       260       270       280       290       300

              310       320   
pF1KB6 FDWWEGKLRGQTGIFPANYVTMN
       :::::::::::::::::::::::
CCDS54 FDWWEGKLRGQTGIFPANYVTMN
              310       320   

>>CCDS42646.2 SH3YL1 gene_id:26751|Hs108|chr2             (342 aa)
 initn: 1710 init1: 1690 opt: 1701  Z-score: 1467.6  bits: 279.9 E(32554): 2e-75
Smith-Waterman score: 2058; 94.4% identity (94.4% similar) in 342 aa overlap (1-323:1-342)

               10        20        30        40        50        60
pF1KB6 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPP
              190       200       210       220       230       240

              250       260                          270       280 
pF1KB6 KPLSRPQQSSAPVQLNSGSQSN-------------------LNQPIEVTALYSFEGQQPG
       ::::::::::::::::::::::                   :::::::::::::::::::
CCDS42 KPLSRPQQSSAPVQLNSGSQSNRNEYKLYPGLSSYHERVGNLNQPIEVTALYSFEGQQPG
              250       260       270       280       290       300

             290       300       310       320   
pF1KB6 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN
       ::::::::::::::::::::::::::::::::::::::::::
CCDS42 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN
              310       320       330       340  

>>CCDS62841.1 SH3YL1 gene_id:26751|Hs108|chr2             (227 aa)
 initn: 1490 init1: 1490 opt: 1490  Z-score: 1290.0  bits: 246.4 E(32554): 1.6e-65
Smith-Waterman score: 1490; 100.0% identity (100.0% similar) in 226 aa overlap (98-323:2-227)

        70        80        90       100       110       120       
pF1KB6 VVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNLTLGGNLT
                                     ::::::::::::::::::::::::::::::
CCDS62                              MVSDLVIILNYDRAVEAFAKGGNLTLGGNLT
                                            10        20        30 

       130       140       150       160       170       180       
pF1KB6 VAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQDIRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQDIRAY
              40        50        60        70        80        90 

       190       200       210       220       230       240       
pF1KB6 DILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPPKPLSRPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPPKPLSRPQ
             100       110       120       130       140       150 

       250       260       270       280       290       300       
pF1KB6 QSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK
             160       170       180       190       200       210 

       310       320   
pF1KB6 LRGQTGIFPANYVTMN
       ::::::::::::::::
CCDS62 LRGQTGIFPANYVTMN
             220       

>>CCDS62842.1 SH3YL1 gene_id:26751|Hs108|chr2             (246 aa)
 initn: 1094 init1: 1074 opt: 1085  Z-score: 944.1  bits: 182.5 E(32554): 2.9e-46
Smith-Waterman score: 1442; 92.2% identity (92.2% similar) in 245 aa overlap (98-323:2-246)

        70        80        90       100       110       120       
pF1KB6 VVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNLTLGGNLT
                                     ::::::::::::::::::::::::::::::
CCDS62                              MVSDLVIILNYDRAVEAFAKGGNLTLGGNLT
                                            10        20        30 

       130       140       150       160       170       180       
pF1KB6 VAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQDIRAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFAGVSLEGSCLIERKETNRKFYCQDIRAY
              40        50        60        70        80        90 

       190       200       210       220       230       240       
pF1KB6 DILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPPKPLSRPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DILFGDTPRPAQAEDLYEILDSFTEKYENEGQRINARKAAREQRKSSAKELPPKPLSRPQ
             100       110       120       130       140       150 

       250       260                          270       280        
pF1KB6 QSSAPVQLNSGSQSN-------------------LNQPIEVTALYSFEGQQPGDLNFQAG
       :::::::::::::::                   ::::::::::::::::::::::::::
CCDS62 QSSAPVQLNSGSQSNRNEYKLYPGLSSYHERVGNLNQPIEVTALYSFEGQQPGDLNFQAG
             160       170       180       190       200       210 

      290       300       310       320   
pF1KB6 DRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN
       :::::::::::::::::::::::::::::::::::
CCDS62 DRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN
             220       230       240      




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:06:47 2016 done: Sat Nov  5 20:06:48 2016
 Total Scan time:  2.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]