Result of FASTA (ccds) for
pFN21AB6408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6408, 335 aa
1>>>pF1KB6408 335 - 335 aa - 335 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3046+/-0.000812; mu= 16.2576+/- 0.049
mean_var=73.6913+/-14.782, 0's: 0 Z-trim(108.1): 50 B-trim: 0 in 0/52
Lambda= 0.149405
statistics sampled from 9959 (10009) to 9959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.307), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS1207.1 SLAMF1 gene_id:6504|Hs108|chr1 ( 335) 2209 485.3 3e-137
CCDS81389.1 SLAMF1 gene_id:6504|Hs108|chr1 ( 357) 1759 388.3 4.9e-108
CCDS1210.1 CD244 gene_id:51744|Hs108|chr1 ( 365) 275 68.5 9.8e-12
CCDS53399.1 CD244 gene_id:51744|Hs108|chr1 ( 370) 263 65.9 6e-11
>>CCDS1207.1 SLAMF1 gene_id:6504|Hs108|chr1 (335 aa)
initn: 2209 init1: 2209 opt: 2209 Z-score: 2577.6 bits: 485.3 E(32554): 3e-137
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
250 260 270 280 290 300
310 320 330
pF1KB6 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::::::::::::::::::::::::::::::::::
CCDS12 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
310 320 330
>>CCDS81389.1 SLAMF1 gene_id:6504|Hs108|chr1 (357 aa)
initn: 1747 init1: 1747 opt: 1759 Z-score: 2053.0 bits: 388.3 E(32554): 4.9e-108
Smith-Waterman score: 1759; 91.6% identity (94.6% similar) in 297 aa overlap (1-293:1-294)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQK--PG--PLQKKLDS
:::::::::::::::::::::::. . :: . : .. .: :. :: :. :.
CCDS81 YAGLLGGVIMILIMVVILQLRRRATLT---TTNQYWSQNVLTQDQERCPGCLPMVKRTIT
250 260 270 280 290
300 310 320 330
pF1KB6 FPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
CCDS81 RQQWKKKALRSMPKSRNQVLFRRNLTPSQLRTLAPPYMLLPQSLSQSLSRKQIPSQSMLV
300 310 320 330 340 350
>>CCDS1210.1 CD244 gene_id:51744|Hs108|chr1 (365 aa)
initn: 178 init1: 114 opt: 275 Z-score: 324.1 bits: 68.5 E(32554): 9.8e-12
Smith-Waterman score: 282; 24.1% identity (55.3% similar) in 320 aa overlap (35-330:1-315)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
CCDS12 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
CCDS12 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB6 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
.: :. ....: : : . . . . .:: .:. ....: :... .: . : : . :
CCDS12 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB6 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.: .:.:.
CCDS12 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
160 170 180 190 200
230 240 250 260 270 280
pF1KB6 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYA
. :.. .: . : . .. ..: .. . . :: . .. . : :. ::::
CCDS12 NLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYE
210 220 230 240 250 260
290 300 310 320 330
pF1KB6 QVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
.:. : ... ..::. .. . .: : :: . :.:. .
CCDS12 DVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRKSGSRK
270 280 290 300 310 320
CCDS12 RNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
330 340 350 360
>>CCDS53399.1 CD244 gene_id:51744|Hs108|chr1 (370 aa)
initn: 178 init1: 114 opt: 263 Z-score: 310.1 bits: 65.9 E(32554): 6e-11
Smith-Waterman score: 270; 23.7% identity (54.2% similar) in 325 aa overlap (35-330:1-320)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
CCDS53 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
CCDS53 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150
pF1KB6 TLGIRESRKEDEGWYLMTLE------KNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGT
.: :. ....: : : . . .... : : .. : ..: :... .: . :
CCDS53 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESLLPDKVEKPRLQGQGKILDRGR
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB6 CTLILGCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISN
: . :.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.:
CCDS53 CQVALSCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSW
160 170 180 190 200
220 230 240 250 260 270
pF1KB6 NSQTFSPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKS
.:.:.. :.. .: . : . .. ..: .. . . :: . .. . : :.
CCDS53 ESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEF
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB6 LTIYAQVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::: .:. : ... ..::. .. . .: : :: . :.:. .
CCDS53 LTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRK
270 280 290 300 310 320
CCDS53 SGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
330 340 350 360 370
335 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:51:05 2016 done: Fri Nov 4 20:51:06 2016
Total Scan time: 2.040 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]