Result of FASTA (omim) for
pFN21AB8903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8903, 235 aa
1>>>pF1KB8903 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5414+/-0.000317; mu= 14.0500+/- 0.020
mean_var=93.9799+/-18.569, 0's: 0 Z-trim(117.2): 266 B-trim: 33 in 1/55
Lambda= 0.132299
statistics sampled from 28600 (28917) to 28600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.339), width: 16
Scan time: 5.100
The best scores are: opt bits E(85289)
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 1580 311.3 9.4e-85
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 1023 204.8 6.9e-53
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 632 130.3 2.7e-30
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 632 130.3 2.7e-30
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 632 130.3 2.7e-30
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 632 130.4 3.2e-30
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 513 107.6 1.9e-23
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 467 98.9 9.3e-21
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 443 94.2 2e-19
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 433 92.3 7.1e-19
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 431 92.0 1.1e-18
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 417 89.3 6.4e-18
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 413 88.5 1e-17
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 407 87.4 2.6e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 407 87.4 2.6e-17
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 398 85.7 8.1e-17
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 394 84.9 1.4e-16
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 392 84.5 1.8e-16
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 392 84.5 1.8e-16
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 388 83.9 3.6e-16
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 382 82.6 6.6e-16
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 369 80.2 4.2e-15
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 361 78.3 5.8e-15
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 363 79.1 9.2e-15
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 300 67.0 3.9e-11
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 302 67.6 4e-11
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 302 67.6 4e-11
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 302 67.6 4e-11
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 302 67.6 4e-11
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 302 67.6 4e-11
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 302 67.6 4e-11
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 302 67.6 4e-11
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 300 67.1 4.5e-11
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 300 67.1 4.5e-11
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 298 66.6 4.9e-11
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 300 67.2 5.1e-11
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 300 67.2 5.2e-11
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 300 67.2 5.2e-11
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 300 67.2 5.2e-11
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 300 67.2 5.2e-11
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 300 67.2 5.2e-11
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 300 67.2 5.2e-11
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 300 67.2 5.6e-11
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 300 67.3 6.4e-11
>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo (235 aa)
initn: 1580 init1: 1580 opt: 1580 Z-score: 1642.6 bits: 311.3 E(85289): 9.4e-85
Smith-Waterman score: 1580; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KB8 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
190 200 210 220 230
>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo (153 aa)
initn: 1023 init1: 1023 opt: 1023 Z-score: 1070.4 bits: 204.8 E(85289): 6.9e-53
Smith-Waterman score: 1023; 100.0% identity (100.0% similar) in 153 aa overlap (83-235:1-153)
60 70 80 90 100 110
pF1KB8 PFYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTA
::::::::::::::::::::::::::::::
NP_710 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTA
10 20 30
120 130 140 150 160 170
pF1KB8 PQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 PQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRI
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB8 EIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_710 EIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK
100 110 120 130 140 150
pF1KB8 QKE
:::
NP_710 QKE
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 596 init1: 486 opt: 632 Z-score: 664.9 bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)
10 20 30 40 50
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
:.:::.: .. ::.::. : .. : :..: ::.::. . :: . .:.. ..: : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
. .. . .: ::: . .::.::. ::. .. : ... ::: .: :.:
XP_005 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
..:: : .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
XP_005 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
::::.::::::::::::::::::::::::.: : :..:...::.....:
XP_005 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE
180 190 200 210 220
pF1KB8 KQKE
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 596 init1: 486 opt: 632 Z-score: 664.9 bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)
10 20 30 40 50
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
:.:::.: .. ::.::. : .. : :..: ::.::. . :: . .:.. ..: : :
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
. .. . .: ::: . .::.::. ::. .. : ... ::: .: :.:
NP_061 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
..:: : .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
NP_061 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
::::.::::::::::::::::::::::::.: : :..:...::.....:
NP_061 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE
180 190 200 210 220
pF1KB8 KQKE
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 596 init1: 486 opt: 632 Z-score: 664.9 bits: 130.3 E(85289): 2.7e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:1-224)
10 20 30 40 50
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP
:.:::.: .. ::.::. : .. : :..: ::.::. . :: . .:.. ..: : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QENVVFSSSRGPYDYG-SNSFYQEKD---MLSNCRQNTLGHNT--QTSIAQDFSSEQGRT
. .. . .: ::: . .::.::. ::. .. : ... ::: .: :.:
XP_005 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR
..:: : .::::::::: .. ..: . ::::: :.::::::::::::.:::::::::
XP_005 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEE
::::.::::::::::::::::::::::::.: : :..:...::.....:
XP_005 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE
180 190 200 210 220
pF1KB8 KQKE
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 596 init1: 486 opt: 632 Z-score: 663.5 bits: 130.4 E(85289): 3.2e-30
Smith-Waterman score: 635; 48.3% identity (72.7% similar) in 238 aa overlap (1-229:65-288)
10 20
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNST
:.:::.: .. ::.::. : .. : :.
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSS
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB8 AY-DPVRHF-STYGAAVAQNRIYSTPFYSPQENVVFSSSRGPYDYG-SNSFYQEKD---M
.: ::.::. . :: . .:.. ..: : : . .. . .: ::: . .::.::.
XP_011 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRA-APCDYGPAPAFYREKESACA
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB8 LSNCRQNTLGHNT--QTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADR
::. .. : ... ::: .: :.: ..:: : .::::::::: .. ..: .
XP_011 LSGADEQPPFHPEPRKSDCAQD-KSVFGET--EEQKCSTPVYPWMQRMNSCNSSSFGPSG
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB8 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN
::::: :.::::::::::::.:::::::::::::.::::::::::::::::::::::::.
XP_011 RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK
220 230 240 250 260 270
210 220 230
pF1KB8 LTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
: : :..:...::.....:
XP_011 LLS----------ASQLSAEEEEEKQAE
280
>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo (233 aa)
initn: 714 init1: 488 opt: 513 Z-score: 542.0 bits: 107.6 E(85289): 1.9e-23
Smith-Waterman score: 696; 49.8% identity (71.2% similar) in 229 aa overlap (1-215:1-229)
10 20 30 40 50
pF1KB8 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ
:.:::.::.. : .::: : .. : ...:: .: : ..:::. .. :..: . :
NP_076 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
10 20 30 40 50 60
60 70 80 90 100
pF1KB8 ENVVFSSSRGPYDYGSNSFYQEKDMLSNC-----RQNTLGHNTQTSIAQ----DFSSEQG
: :.. .:. :.::.. ::..::. . .: : . : : : :: ::
NP_076 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL
.. . :.: . .::::::::: .:. ::. ::::: :.:::::::::::::::::
NP_076 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKRE
:::::::::::::::::::::::::::::::::..: .. . .: . :
NP_076 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
190 200 210 220 230
230
pF1KB8 ETEEEKQKE
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 455 init1: 430 opt: 467 Z-score: 493.7 bits: 98.9 E(85289): 9.3e-21
Smith-Waterman score: 486; 47.4% identity (68.9% similar) in 196 aa overlap (38-213:75-267)
10 20 30 40 50 60
pF1KB8 PSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP---FYSPQENVVFS
.. .:: :. : :: : .::: . .
NP_061 YGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPATSTHSPQPDPLPC
50 60 70 80 90 100
70 80 90 100
pF1KB8 SSRGPYDYGSNSFYQEKDMLSNCRQNTL-----------GHNTQTSIAQDF--SSEQG--
:. .: . ::.: . :. ::: . : .: .. .: ::::.
NP_061 SAVAP-SPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASA
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB8 RTAPQDQK-ASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLT
.. :. :. ::::::.... ::...: : . .:.: :.::::::::::::::::::
NP_061 QSEPSPAPPAQPQIYPWMRKLHISHDNIG-GPEGKRARTAYTRYQTLELEKEFHFNRYLT
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB8 RRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREE
::::::::.::::.:::::::::::::::::...: : ...:::
NP_061 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
230 240 250 260 270
230
pF1KB8 TEEEKQKE
>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo (230 aa)
initn: 480 init1: 398 opt: 443 Z-score: 469.8 bits: 94.2 E(85289): 2e-19
Smith-Waterman score: 478; 39.2% identity (65.4% similar) in 240 aa overlap (2-235:3-229)
10 20 30 40 50
pF1KB8 MNSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP-FYSPQ
.::..: .: . ::.. .. :. .: .. : . : :::. : ..: .:. .
NP_008 MSSSYYVNALFSKYTAGAS-LFQNAEPTSCSFAPNSQRSGYGAG-AGAFASTVPGLYNVN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 ENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKA
. : . : :.... . .. :: : .. . . ....: . .:
NP_008 SPLYQSPFASGYGLGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEG-ALHGAAEA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 SIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANAL
...:::::. . : ::.:::: :.::::::::::::::::::::::::::.::
NP_008 NFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL
120 130 140 150 160
180 190 200 210 220 230
pF1KB8 CLTERQIKIWFQNRRMKWKKESNLTSTLS-----GGGGGATADSLGGKEEKREETEEEKQ
::::::::::::::::::::: . . . :. .:.: . . : ..... :::..
NP_008 CLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEED
170 180 190 200 210 220
pF1KB8 KE
.:
NP_008 EEE
230
>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo (217 aa)
initn: 415 init1: 383 opt: 433 Z-score: 459.8 bits: 92.3 E(85289): 7.1e-19
Smith-Waterman score: 450; 42.0% identity (63.2% similar) in 231 aa overlap (2-227:8-217)
10 20 30 40 50
pF1KB8 MNSYFTN-PSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTP
:. :.. :. : .: : ..:. . . : .: : :::. . . :
NP_004 MSSLYYANTLFSKYPASSSVFATG--AFPEQTSCAFASNPQR--PGYGAGSGASFAASMQ
10 20 30 40 50
60 70 80 90 100
pF1KB8 -FYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNC---RQNTLGHNTQTSIAQDFSSEQG
.: ... .:. : : : . . .: .: .:: : : ..::
NP_004 GLYPGGGGMAGQSAAGVYAAGYGLEPSSFNM--HCAPFEQNLSGVCPGDSAKAAGAKEQ-
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 RTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRR
: . .....:::::. . :.::.:::: :.::::::::::::.:::::::
NP_004 RDSDLAAESNFRIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRR
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 RRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETE
::::::..:::::::::::::::::::::: : :. : :.:... . ::..::
NP_004 RRIEIAHTLCLTERQIKIWFQNRRMKWKKE-NKTA-----GPGTTGQDRAEAEEEEEE
170 180 190 200 210
230
pF1KB8 EEKQKE
235 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:04:28 2016 done: Sat Nov 5 20:04:28 2016
Total Scan time: 5.100 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]