Result of FASTA (omim) for
pFN21AE0205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0205, 214 aa
1>>>pF1KE0205 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7554+/-0.000347; mu= 16.7916+/- 0.022
mean_var=60.2944+/-11.920, 0's: 0 Z-trim(114.3): 10 B-trim: 0 in 0/55
Lambda= 0.165172
statistics sampled from 23996 (24002) to 23996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.281), width: 16
Scan time: 5.820
The best scores are: opt bits E(85289)
NP_006004 (OMIM: 300847,312173) 60S ribosomal prot ( 214) 1438 350.7 1e-96
NP_001290553 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1438 350.7 1e-96
NP_001290554 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1438 350.7 1e-96
NP_001243509 (OMIM: 300847,312173) 60S ribosomal p ( 178) 998 245.8 3.3e-65
NP_001243506 (OMIM: 300847,312173) 60S ribosomal p ( 216) 767 190.8 1.4e-48
NP_001290555 (OMIM: 300847,312173) 60S ribosomal p ( 145) 763 189.8 2e-48
>>NP_006004 (OMIM: 300847,312173) 60S ribosomal protein (214 aa)
initn: 1438 init1: 1438 opt: 1438 Z-score: 1857.3 bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_006 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_006 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_006 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
::::::.: ::::::::::.::.:::::::.:::
NP_006 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001290553 (OMIM: 300847,312173) 60S ribosomal prote (214 aa)
initn: 1438 init1: 1438 opt: 1438 Z-score: 1857.3 bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001290554 (OMIM: 300847,312173) 60S ribosomal prote (214 aa)
initn: 1438 init1: 1438 opt: 1438 Z-score: 1857.3 bits: 350.7 E(85289): 1e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001243509 (OMIM: 300847,312173) 60S ribosomal prote (178 aa)
initn: 1199 init1: 997 opt: 998 Z-score: 1291.8 bits: 245.8 E(85289): 3.3e-65
Smith-Waterman score: 1131; 79.4% identity (82.7% similar) in 214 aa overlap (1-214:1-178)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
10 20
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
NP_001 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
90 100 110 120 130 140
190 200 210
pF1KE0 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
::::::.: ::::::::::.::.:::::::.:::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
150 160 170
>>NP_001243506 (OMIM: 300847,312173) 60S ribosomal prote (216 aa)
initn: 767 init1: 767 opt: 767 Z-score: 993.1 bits: 190.8 E(85289): 1.4e-48
Smith-Waterman score: 767; 92.4% identity (94.9% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::.::::.::::::::::::::::::::::: . ::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRSTSQRSGASP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
NP_001 SSMLMNLKTWWLKSGSSQMAVGSSTSPVVALWTSGGPCTHEGFQCAAPLLILTNKFYFLS
130 140 150 160 170 180
>>NP_001290555 (OMIM: 300847,312173) 60S ribosomal prote (145 aa)
initn: 775 init1: 761 opt: 763 Z-score: 990.4 bits: 189.8 E(85289): 2e-48
Smith-Waterman score: 763; 88.1% identity (92.1% similar) in 126 aa overlap (1-125:1-126)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::.::::.::::::::::::::::::::::: . : :
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRHARCLWKAPG
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 K-PQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNAD
. ::.
NP_001 HCGQGSHWPSYHVHPHQAAEQGACD
130 140
214 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:22:25 2016 done: Thu Nov 3 21:22:25 2016
Total Scan time: 5.820 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]