(Circular) (Six-base) MAPSORT of: pFN21AB6392.seq Check: 3362 from: 1 to: 5614 pFN21AB6392 5614 bp With 182 enzymes: SgfI * October 20, 2009 10:40 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3424 278 Size: 53 83 186 936 1888 2468 Fragments arranged by size: 2468 1888 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2957 1937 Size: 1020 4594 Acc65I G'GTAC_C Cuts at: 2287 2935 2287 Size: 648 4966 AclI AA'CG_TT Cuts at: 1563 3741 4114 1563 Size: 2178 373 3063 Fragments arranged by size: 3063 2178 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3677 5061 5329 1632 Size: 2045 1384 268 1917 Fragments arranged by size: 2045 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5417 AflIII A'CryG_T Cuts at: 1203 4513 5490 1203 Size: 3310 977 1327 Fragments arranged by size: 3310 1327 977 AgeI A'CCGG_T Cuts at: 4445 4445 Size: 5614 AhdI GACnn_n'nnGTC Cuts at: 4343 4343 Size: 5614 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5614 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5614 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2350 2382 2350 Size: 32 5582 AlwNI CAG_nnn'CTG Cuts at: 2119 3357 4929 2119 Size: 1238 1572 2804 Fragments arranged by size: 2804 1572 1238 ApaLI G'TGCA_C Cuts at: 3671 4827 3671 Size: 1156 4458 ApoI r'AATT_y Cuts at: 1493 2324 2456 2923 3149 3301 5410 1493 Size: 831 132 467 226 152 2109 1697 Fragments arranged by size: 2109 1697 831 467 226 152 132 AseI AT'TA_AT Cuts at: 160 1032 4168 160 Size: 872 3136 1606 Fragments arranged by size: 3136 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5614 AvaI C'yCGr_G Cuts at: 1870 1943 2404 2939 1870 Size: 73 461 535 4545 Fragments arranged by size: 4545 535 461 73 BamHI G'GATC_C Cuts at: 2944 3311 2944 Size: 367 5247 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2287 2935 4390 618 Size: 325 217 627 500 648 1455 1842 Fragments arranged by size: 1842 1455 648 627 500 325 217 BanII G_rGCy'C Cuts at: 1391 2012 2545 2933 1391 Size: 621 533 388 4072 Fragments arranged by size: 4072 621 533 388 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4643 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3805 3839 1903 Size: 34 1868 34 3678 Fragments arranged by size: 3678 1868 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3506 4716 3506 Size: 1210 4404 BclI T'GATC_A Cuts at: 1548 1548 Size: 5614 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4225 136 Size: 107 122 71 631 605 2553 1525 Fragments arranged by size: 2553 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5609 5609 Size: 5614 BlpI GC'TnA_GC Cuts at: 2011 3031 2011 Size: 1020 4594 Bme1580I G_kGCm'C Cuts at: 1790 2396 2585 3675 4831 1790 Size: 606 189 1090 1156 2573 Fragments arranged by size: 2573 1156 1090 606 189 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5614 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2579 3345 4303 Size: 416 53 83 399 24 1162 766 958 Cuts at: 4303 442 Size: 1753 Fragments arranged by size: 1753 1162 958 766 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5614 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2082 2123 2657 4274 1239 Size: 843 41 534 1617 2579 Fragments arranged by size: 2579 1617 843 534 41 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2728 3739 4604 4902 2728 Size: 1011 865 298 3440 Fragments arranged by size: 3440 1011 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2058 2220 2500 4277 882 Size: 617 559 162 280 1777 2219 Fragments arranged by size: 2219 1777 617 559 280 162 BsaAI yAC'GTr Cuts at: 493 1204 3405 493 Size: 711 2201 2702 Fragments arranged by size: 2702 2201 711 BsaBI GATnn'nnATC Cuts at: 5608 5608 Size: 5614 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3421 3803 4438 275 Size: 53 83 186 936 1888 382 635 1451 Fragments arranged by size: 1888 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4047 4445 4719 4866 5277 4047 Size: 398 274 147 411 4384 Fragments arranged by size: 4384 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5389 Fragments arranged by size: 5389 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5614 BseYI C'CCAG_C Cuts at: 4817 5313 4817 Size: 496 5118 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5041 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3064 3825 4853 1540 Size: 275 186 1063 761 1028 2301 Fragments arranged by size: 2301 1063 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2538 3675 3760 4831 2538 Size: 1137 85 1071 3321 Fragments arranged by size: 3321 1137 1071 85 BsmI GAATG_Cn' Cuts at: 2150 2441 3125 3218 2150 Size: 291 684 93 4546 Fragments arranged by size: 4546 684 291 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2012 2396 2538 2545 2585 2933 3675 Size: 399 222 384 142 7 40 348 742 Cuts at: 3675 3760 4831 1391 Size: 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 384 348 222 142 85 40 7 BspEI T'CCGG_A Cuts at: 5277 5277 Size: 5614 BspHI T'CATG_A Cuts at: 3503 5233 3503 Size: 1730 3884 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2969 844 Size: 2125 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3501 1394 Size: 429 1678 3507 Fragments arranged by size: 3507 1678 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2617 2805 4109 4283 65 Size: 1183 1369 188 1304 174 1396 Fragments arranged by size: 1396 1369 1304 1183 188 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4258 4445 1700 Size: 110 2448 187 2869 Fragments arranged by size: 2869 2448 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5614 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5614 BssSI C'ACGA_G Cuts at: 2464 3674 4686 2464 Size: 1210 1012 3392 Fragments arranged by size: 3392 1210 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2100 2160 2169 2643 794 Size: 1306 60 9 474 3765 Fragments arranged by size: 3765 1306 474 60 9 BstBI TT'CG_AA Cuts at: 4418 4418 Size: 5614 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5614 BstYI r'GATC_y Cuts at: 1972 2944 3311 3696 3713 5165 5251 5263 5609 Size: 972 367 385 17 1452 86 12 346 Cuts at: 5609 1972 Size: 1977 Fragments arranged by size: 1977 1452 972 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2251 513 Size: 552 939 247 3876 Fragments arranged by size: 3876 939 552 247 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4875 Fragments arranged by size: 4875 683 56 BtsI GCAGTG_nn' Cuts at: 2585 3130 3924 3944 2585 Size: 545 794 20 4255 Fragments arranged by size: 4255 794 545 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5614 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5579 DraI TTT'AAA Cuts at: 2918 2918 Size: 5614 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4621 809 Size: 507 3305 1802 Fragments arranged by size: 3305 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2737 3061 3950 Size: 54 1425 50 275 18 907 324 889 Cuts at: 3950 5579 8 Size: 1629 43 Fragments arranged by size: 1629 1425 907 889 324 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3061 1537 Size: 275 1249 4090 Fragments arranged by size: 4090 1249 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3544 1353 Size: 2191 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4201 4575 4721 387 Size: 1064 138 2612 374 146 1280 Fragments arranged by size: 2612 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2082 2123 2657 3677 4274 5061 5329 Size: 393 450 41 534 1020 597 787 268 Cuts at: 5329 1239 Size: 1524 Fragments arranged by size: 1524 1020 787 597 534 450 393 268 41 EcoO109I rG'GnC_Cy Cuts at: 2256 2256 Size: 5614 EcoRI G'AATT_C Cuts at: 2923 3301 2923 Size: 378 5236 FspI TGC'GCA Cuts at: 4120 4120 Size: 5614 HaeII r_GCGC'y Cuts at: 1678 4761 1678 Size: 3083 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4255 4287 4329 4361 1373 Size: 32 135 32 2683 32 42 32 2626 Fragments arranged by size: 2683 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2958 3204 669 Size: 988 281 1020 246 3079 Fragments arranged by size: 3079 1020 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5614 HpaI GTT'AAC Cuts at: 3204 3204 Size: 5614 KpnI G_GTAC'C Cuts at: 2291 2939 2291 Size: 648 4966 MfeI C'AATT_G Cuts at: 3213 3213 Size: 5614 MluI A'CGCG_T Cuts at: 5490 5490 Size: 5614 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4728 4912 1305 Size: 3423 184 2007 Fragments arranged by size: 3423 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2739 10 Size: 54 1425 343 907 2885 Fragments arranged by size: 2885 1425 907 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3572 3931 4090 518 Size: 648 2406 359 159 2042 Fragments arranged by size: 2406 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2015 2191 3030 3707 4855 5100 1606 Size: 409 176 839 677 1148 245 2120 Fragments arranged by size: 2120 1148 839 677 409 245 176 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4123 Fragments arranged by size: 4123 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5614 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5614 NotI GC'GGCC_GC Cuts at: 3061 3061 Size: 5614 NspI r_CATG'y Cuts at: 1132 1229 2188 2489 2972 4517 1132 Size: 97 959 301 483 1545 2229 Fragments arranged by size: 2229 1545 959 483 301 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5614 PciI A'CATG_T Cuts at: 4513 4513 Size: 5614 PflMI CCAn_nnn'nTGG Cuts at: 1108 2680 1108 Size: 1572 4042 PfoI T'CCnGG_A Cuts at: 2059 2139 2059 Size: 80 5534 PmeI GTTT'AAAC Cuts at: 2918 2918 Size: 5614 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3683 3715 5196 5228 3683 Size: 32 1481 32 4069 Fragments arranged by size: 4069 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2256 2256 Size: 5614 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5614 PsiI TTA'TAA Cuts at: 3184 3184 Size: 5614 PspXI vC'TCGA_Gb Cuts at: 2404 2404 Size: 5614 PstI C_TGCA'G Cuts at: 830 2265 2966 830 Size: 1435 701 3478 Fragments arranged by size: 3478 1435 701 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5614 PvuII CAG'CTG Cuts at: 2015 2191 2015 Size: 176 5438 SalI G'TCGA_C Cuts at: 1936 2956 1936 Size: 1020 4594 SanDI GG'GwC_CC Cuts at: 2256 2256 Size: 5614 SbfI CC_TGCA'GG Cuts at: 2265 2966 2265 Size: 701 4913 ScaI AGT'ACT Cuts at: 3862 5574 3862 Size: 1712 3902 SfcI C'TryA_G Cuts at: 826 1045 2261 2500 2962 4097 4778 4969 826 Size: 219 1216 239 462 1135 681 191 1471 Fragments arranged by size: 1471 1216 1135 681 462 239 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5614 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5614 SmaI CCC'GGG Cuts at: 1872 2941 1872 Size: 1069 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2404 2743 3718 4619 4881 820 Size: 197 926 461 339 975 901 262 1553 Fragments arranged by size: 1553 975 926 901 461 339 262 197 SnaBI TAC'GTA Cuts at: 493 3405 493 Size: 2912 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5614 SphI G_CATG'C Cuts at: 1132 2489 2972 1132 Size: 1357 483 3774 Fragments arranged by size: 3774 1357 483 SspI AAT'ATT Cuts at: 5 52 3538 5 Size: 47 3486 2081 Fragments arranged by size: 3486 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5614 StyI C'CwwG_G Cuts at: 513 1065 2004 2811 3053 513 Size: 552 939 807 242 3074 Fragments arranged by size: 3074 939 807 552 242 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3641 3658 3811 3996 4441 325 Size: 1255 2061 17 153 185 445 1498 Fragments arranged by size: 2061 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2181 3860 5572 Size: 274 80 33 51 1443 204 1679 1712 Cuts at: 5572 96 Size: 138 Fragments arranged by size: 1712 1679 1443 274 204 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2135 2167 2409 2441 2888 2920 5574 5606 2135 Size: 32 242 32 447 32 2654 32 2143 Fragments arranged by size: 2654 2143 447 242 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5614 XbaI T'CTAG_A Cuts at: 2950 2950 Size: 5614 XhoI C'TCGA_G Cuts at: 1943 2404 1943 Size: 461 5153 XmaI C'CCGG_G Cuts at: 1870 2939 1870 Size: 1069 4545 XmnI GAAnn'nnTTC Cuts at: 3743 3743 Size: 5614 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3422 276 Size: 53 83 186 936 1888 2468 Fragments arranged by size: 2468 1888 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspXI PstI PvuI PvuII SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PsrI RsrII SacI SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI