Result of FASTA (omim) for
pFN21AB8237
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8237, 259 aa
1>>>pF1KB8237 259 - 259 aa - 259 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6484+/-0.000422; mu= 3.4282+/- 0.026
mean_var=199.8787+/-41.857, 0's: 0 Z-trim(118.3): 539 B-trim: 86 in 1/51
Lambda= 0.090717
statistics sampled from 30286 (31031) to 30286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.364), width: 16
Scan time: 7.740
The best scores are: opt bits E(85289)
XP_005260193 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 1703 235.2 9e-62
XP_005260194 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 1703 235.2 9e-62
XP_006722993 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 1703 235.2 9e-62
XP_005260191 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 1691 233.6 2.7e-61
XP_005260192 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 1691 233.6 2.7e-61
NP_003712 (OMIM: 209920,603200) DNA-binding protei ( 260) 1691 233.6 2.7e-61
XP_016882904 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 1691 233.6 2.7e-61
NP_604389 (OMIM: 209920,603200) DNA-binding protei ( 237) 971 139.4 5.9e-33
NP_001265657 (OMIM: 209920,603200) DNA-binding pro ( 237) 971 139.4 5.9e-33
XP_016882905 (OMIM: 209920,603200) PREDICTED: DNA- ( 238) 971 139.4 5.9e-33
NP_001265656 (OMIM: 209920,603200) DNA-binding pro ( 238) 971 139.4 5.9e-33
XP_005248617 (OMIM: 605787) PREDICTED: ankyrin rep ( 245) 791 115.8 7.4e-26
NP_075526 (OMIM: 605787) ankyrin repeat family A p ( 313) 791 115.9 8.8e-26
XP_016865167 (OMIM: 605787) PREDICTED: ankyrin rep ( 152) 633 94.9 8.9e-20
XP_011517333 (OMIM: 607001,610253) PREDICTED: hist ( 488) 270 47.9 4e-05
XP_011517332 (OMIM: 607001,610253) PREDICTED: hist ( 559) 270 48.0 4.4e-05
XP_011517331 (OMIM: 607001,610253) PREDICTED: hist ( 775) 270 48.1 5.5e-05
XP_011517335 (OMIM: 607001,610253) PREDICTED: hist (1246) 270 48.3 7.7e-05
XP_011517328 (OMIM: 607001,610253) PREDICTED: hist (1253) 270 48.3 7.7e-05
XP_016870626 (OMIM: 607001,610253) PREDICTED: hist (1260) 270 48.3 7.8e-05
XP_016870627 (OMIM: 607001,610253) PREDICTED: hist (1260) 270 48.3 7.8e-05
XP_016870625 (OMIM: 607001,610253) PREDICTED: hist (1265) 270 48.4 7.8e-05
XP_011517327 (OMIM: 607001,610253) PREDICTED: hist (1267) 270 48.4 7.8e-05
XP_005266167 (OMIM: 607001,610253) PREDICTED: hist (1267) 270 48.4 7.8e-05
XP_011517326 (OMIM: 607001,610253) PREDICTED: hist (1275) 270 48.4 7.8e-05
XP_016870624 (OMIM: 607001,610253) PREDICTED: hist (1291) 270 48.4 7.9e-05
XP_006717351 (OMIM: 607001,610253) PREDICTED: hist (1292) 270 48.4 7.9e-05
XP_016870623 (OMIM: 607001,610253) PREDICTED: hist (1293) 270 48.4 7.9e-05
XP_011517325 (OMIM: 607001,610253) PREDICTED: hist (1294) 270 48.4 7.9e-05
XP_005266162 (OMIM: 607001,610253) PREDICTED: hist (1295) 270 48.4 7.9e-05
NP_079033 (OMIM: 607001,610253) histone-lysine N-m (1298) 270 48.4 7.9e-05
XP_011517324 (OMIM: 607001,610253) PREDICTED: hist (1300) 270 48.4 7.9e-05
XP_011517323 (OMIM: 607001,610253) PREDICTED: hist (1301) 270 48.4 7.9e-05
NP_079532 (OMIM: 604599) histone-lysine N-methyltr (1176) 258 46.7 0.00022
NP_006700 (OMIM: 604599) histone-lysine N-methyltr (1210) 258 46.8 0.00022
NP_001276342 (OMIM: 604599) histone-lysine N-methy (1233) 258 46.8 0.00023
XP_005248881 (OMIM: 604599) PREDICTED: histone-lys (1267) 258 46.8 0.00023
XP_016863601 (OMIM: 106410,600919) PREDICTED: anky (1689) 259 47.0 0.00026
XP_016863600 (OMIM: 106410,600919) PREDICTED: anky (1755) 259 47.1 0.00026
XP_016863598 (OMIM: 106410,600919) PREDICTED: anky (1770) 259 47.1 0.00027
XP_016863594 (OMIM: 106410,600919) PREDICTED: anky (1810) 259 47.1 0.00027
XP_016863591 (OMIM: 106410,600919) PREDICTED: anky (1838) 259 47.1 0.00027
XP_016863584 (OMIM: 106410,600919) PREDICTED: anky (1871) 259 47.1 0.00028
XP_016863569 (OMIM: 106410,600919) PREDICTED: anky (1970) 259 47.1 0.00029
XP_016863568 (OMIM: 106410,600919) PREDICTED: anky (2006) 258 47.0 0.00032
XP_016863566 (OMIM: 106410,600919) PREDICTED: anky (4074) 259 47.4 0.00048
XP_016863561 (OMIM: 106410,600919) PREDICTED: anky (4137) 259 47.4 0.00048
XP_016863558 (OMIM: 106410,600919) PREDICTED: anky (4175) 258 47.3 0.00053
NP_065210 (OMIM: 182900,612641) ankyrin-1 isoform (1719) 250 45.9 0.00059
XP_011542807 (OMIM: 182900,612641) PREDICTED: anky (1751) 250 45.9 0.0006
>>XP_005260193 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 1703 init1: 1703 opt: 1703 Z-score: 1230.0 bits: 235.2 E(85289): 9e-62
Smith-Waterman score: 1703; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
190 200 210 220 230 240
250
pF1KB8 IENHILKLFQSNLVPADPE
:::::::::::::::::::
XP_005 IENHILKLFQSNLVPADPE
250
>>XP_005260194 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 1703 init1: 1703 opt: 1703 Z-score: 1230.0 bits: 235.2 E(85289): 9e-62
Smith-Waterman score: 1703; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
190 200 210 220 230 240
250
pF1KB8 IENHILKLFQSNLVPADPE
:::::::::::::::::::
XP_005 IENHILKLFQSNLVPADPE
250
>>XP_006722993 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 1703 init1: 1703 opt: 1703 Z-score: 1230.0 bits: 235.2 E(85289): 9e-62
Smith-Waterman score: 1703; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
190 200 210 220 230 240
250
pF1KB8 IENHILKLFQSNLVPADPE
:::::::::::::::::::
XP_006 IENHILKLFQSNLVPADPE
250
>>XP_005260191 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 1285 init1: 1285 opt: 1691 Z-score: 1221.5 bits: 233.6 E(85289): 2.7e-61
Smith-Waterman score: 1691; 99.6% identity (99.6% similar) in 260 aa overlap (1-259:1-260)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
190 200 210 220 230 240
240 250
pF1KB8 VIENHILKLFQSNLVPADPE
::::::::::::::::::::
XP_005 VIENHILKLFQSNLVPADPE
250 260
>>XP_005260192 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 1285 init1: 1285 opt: 1691 Z-score: 1221.5 bits: 233.6 E(85289): 2.7e-61
Smith-Waterman score: 1691; 99.6% identity (99.6% similar) in 260 aa overlap (1-259:1-260)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
190 200 210 220 230 240
240 250
pF1KB8 VIENHILKLFQSNLVPADPE
::::::::::::::::::::
XP_005 VIENHILKLFQSNLVPADPE
250 260
>>NP_003712 (OMIM: 209920,603200) DNA-binding protein RF (260 aa)
initn: 1285 init1: 1285 opt: 1691 Z-score: 1221.5 bits: 233.6 E(85289): 2.7e-61
Smith-Waterman score: 1691; 99.6% identity (99.6% similar) in 260 aa overlap (1-259:1-260)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
190 200 210 220 230 240
240 250
pF1KB8 VIENHILKLFQSNLVPADPE
::::::::::::::::::::
NP_003 VIENHILKLFQSNLVPADPE
250 260
>>XP_016882904 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 1285 init1: 1285 opt: 1691 Z-score: 1221.5 bits: 233.6 E(85289): 2.7e-61
Smith-Waterman score: 1691; 99.6% identity (99.6% similar) in 260 aa overlap (1-259:1-260)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
190 200 210 220 230 240
240 250
pF1KB8 VIENHILKLFQSNLVPADPE
::::::::::::::::::::
XP_016 VIENHILKLFQSNLVPADPE
250 260
>>NP_604389 (OMIM: 209920,603200) DNA-binding protein RF (237 aa)
initn: 1543 init1: 971 opt: 971 Z-score: 712.7 bits: 139.4 E(85289): 5.9e-33
Smith-Waterman score: 1502; 91.1% identity (91.1% similar) in 259 aa overlap (1-259:1-237)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_604 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
::::::::::::::::::::::::::::: ::::::::
NP_604 PQGSSLKHSTTLTNRQRGNEVSALPATLDC----------------------DNLVNKPD
70 80 90
130 140 150 160 170 180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_604 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_604 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
160 170 180 190 200 210
250
pF1KB8 IENHILKLFQSNLVPADPE
:::::::::::::::::::
NP_604 IENHILKLFQSNLVPADPE
220 230
>>NP_001265657 (OMIM: 209920,603200) DNA-binding protein (237 aa)
initn: 1543 init1: 971 opt: 971 Z-score: 712.7 bits: 139.4 E(85289): 5.9e-33
Smith-Waterman score: 1502; 91.1% identity (91.1% similar) in 259 aa overlap (1-259:1-237)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
::::::::::::::::::::::::::::: ::::::::
NP_001 PQGSSLKHSTTLTNRQRGNEVSALPATLDC----------------------DNLVNKPD
70 80 90
130 140 150 160 170 180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
160 170 180 190 200 210
250
pF1KB8 IENHILKLFQSNLVPADPE
:::::::::::::::::::
NP_001 IENHILKLFQSNLVPADPE
220 230
>>XP_016882905 (OMIM: 209920,603200) PREDICTED: DNA-bind (238 aa)
initn: 1403 init1: 971 opt: 971 Z-score: 712.7 bits: 139.4 E(85289): 5.9e-33
Smith-Waterman score: 1490; 90.8% identity (90.8% similar) in 260 aa overlap (1-259:1-238)
10 20 30 40 50 60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
:: ::::::::::::::::::::::::::: :::::::
XP_016 PQAGSSLKHSTTLTNRQRGNEVSALPATLDC----------------------DNLVNKP
70 80 90
120 130 140 150 160 170
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
160 170 180 190 200 210
240 250
pF1KB8 VIENHILKLFQSNLVPADPE
::::::::::::::::::::
XP_016 VIENHILKLFQSNLVPADPE
220 230
259 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:02:20 2016 done: Fri Nov 4 22:02:21 2016
Total Scan time: 7.740 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]