Result of FASTA (omim) for
pFN21AB6470
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6470, 354 aa
1>>>pF1KB6470 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7994+/-0.000367; mu= 13.7014+/- 0.023
mean_var=75.5326+/-15.468, 0's: 0 Z-trim(113.5): 80 B-trim: 1203 in 2/54
Lambda= 0.147573
statistics sampled from 22830 (22911) to 22830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.269), width: 16
Scan time: 7.920
The best scores are: opt bits E(85289)
NP_852136 (OMIM: 600404) replication factor C subu ( 354) 2320 503.4 3e-142
NP_001265720 (OMIM: 600404) replication factor C s ( 253) 1647 360.1 3.1e-99
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253) 1647 360.1 3.1e-99
NP_001265721 (OMIM: 600404) replication factor C s ( 251) 1594 348.8 7.6e-96
NP_001265722 (OMIM: 600404) replication factor C s ( 219) 1382 303.6 2.6e-82
NP_002905 (OMIM: 600404) replication factor C subu ( 320) 1383 303.9 3.1e-82
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217) 1369 300.9 1.8e-81
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217) 1369 300.9 1.8e-81
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340) 740 167.0 5.3e-41
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340) 740 167.0 5.3e-41
NP_031396 (OMIM: 600407) replication factor C subu ( 340) 740 167.0 5.3e-41
NP_001193730 (OMIM: 600407) replication factor C s ( 337) 735 166.0 1.1e-40
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304) 706 159.8 7.3e-39
NP_853556 (OMIM: 600407) replication factor C subu ( 319) 706 159.8 7.6e-39
NP_002907 (OMIM: 102577) replication factor C subu ( 363) 673 152.8 1.1e-36
NP_853551 (OMIM: 102577) replication factor C subu ( 363) 673 152.8 1.1e-36
NP_001123584 (OMIM: 600407) replication factor C s ( 255) 541 124.6 2.4e-28
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291) 229 58.2 2.6e-08
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293) 229 58.2 2.6e-08
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297) 229 58.2 2.7e-08
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297) 229 58.2 2.7e-08
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297) 229 58.2 2.7e-08
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298) 229 58.2 2.7e-08
NP_853536 (OMIM: 600405) replication factor C subu ( 305) 229 58.2 2.7e-08
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313) 229 58.2 2.8e-08
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343) 229 58.2 3e-08
NP_002906 (OMIM: 600405) replication factor C subu ( 356) 229 58.3 3.1e-08
XP_016866549 (OMIM: 608196) PREDICTED: ATPase WRNI ( 438) 192 50.4 8.8e-06
XP_005249289 (OMIM: 608196) PREDICTED: ATPase WRNI ( 419) 189 49.8 1.3e-05
NP_064520 (OMIM: 608196) ATPase WRNIP1 isoform 1 [ ( 665) 189 49.9 2e-05
XP_016864017 (OMIM: 102579) PREDICTED: replication (1121) 172 46.4 0.00037
XP_011512032 (OMIM: 102579) PREDICTED: replication (1122) 172 46.4 0.00038
NP_002904 (OMIM: 102579) replication factor C subu (1147) 172 46.4 0.00038
NP_001191676 (OMIM: 102579) replication factor C s (1148) 172 46.4 0.00038
NP_569079 (OMIM: 608196) ATPase WRNIP1 isoform 2 [ ( 640) 161 43.9 0.0012
>>NP_852136 (OMIM: 600404) replication factor C subunit (354 aa)
initn: 2320 init1: 2320 opt: 2320 Z-score: 2674.8 bits: 503.4 E(85289): 3e-142
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
310 320 330 340 350
>>NP_001265720 (OMIM: 600404) replication factor C subun (253 aa)
initn: 1647 init1: 1647 opt: 1647 Z-score: 1902.6 bits: 360.1 E(85289): 3.1e-99
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 253 aa overlap (102-354:1-253)
80 90 100 110 120 130
pF1KB6 IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLP
::::::::::::::::::::::::::::::
NP_001 MLELNASNDRGIDVVRNKIKMFAQQKVTLP
10 20 30
140 150 160 170 180 190
pF1KB6 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB6 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
160 170 180 190 200 210
320 330 340 350
pF1KB6 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
:::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
220 230 240 250
>>XP_016867981 (OMIM: 600404) PREDICTED: replication fac (253 aa)
initn: 1647 init1: 1647 opt: 1647 Z-score: 1902.6 bits: 360.1 E(85289): 3.1e-99
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 253 aa overlap (102-354:1-253)
80 90 100 110 120 130
pF1KB6 IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLP
::::::::::::::::::::::::::::::
XP_016 MLELNASNDRGIDVVRNKIKMFAQQKVTLP
10 20 30
140 150 160 170 180 190
pF1KB6 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB6 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
160 170 180 190 200 210
320 330 340 350
pF1KB6 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
:::::::::::::::::::::::::::::::::::::::::::
XP_016 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
220 230 240 250
>>NP_001265721 (OMIM: 600404) replication factor C subun (251 aa)
initn: 1594 init1: 1594 opt: 1594 Z-score: 1841.7 bits: 348.8 E(85289): 7.6e-96
Smith-Waterman score: 1594; 99.2% identity (99.6% similar) in 247 aa overlap (108-354:5-251)
80 90 100 110 120 130
pF1KB6 PGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKI
:. :::::::::::::::::::::::::::
NP_001 MCPTSSLRGIDVVRNKIKMFAQQKVTLPKGRHKI
10 20 30
140 150 160 170 180 190
pF1KB6 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB6 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
160 170 180 190 200 210
320 330 340 350
pF1KB6 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
:::::::::::::::::::::::::::::::::::::
NP_001 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
220 230 240 250
>>NP_001265722 (OMIM: 600404) replication factor C subun (219 aa)
initn: 1382 init1: 1382 opt: 1382 Z-score: 1598.7 bits: 303.6 E(85289): 2.6e-82
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 211 aa overlap (144-354:9-219)
120 130 140 150 160 170
pF1KB6 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA
::::::::::::::::::::::::::::::
NP_001 MLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNA
10 20 30
180 190 200 210 220 230
pF1KB6 SDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQAL
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 NNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPE
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 DIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVA
160 170 180 190 200 210
pF1KB6 S
:
NP_001 S
>>NP_002905 (OMIM: 600404) replication factor C subunit (320 aa)
initn: 1382 init1: 1382 opt: 1383 Z-score: 1597.3 bits: 303.9 E(85289): 3.1e-82
Smith-Waterman score: 2024; 90.4% identity (90.4% similar) in 354 aa overlap (1-354:1-320)
10 20 30 40 50 60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND----------
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
::::::::::::::::::::::::::::::::::::
NP_002 ------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
120 130 140
190 200 210 220 230 240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
210 220 230 240 250 260
310 320 330 340 350
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
270 280 290 300 310 320
>>XP_006716143 (OMIM: 600404) PREDICTED: replication fac (217 aa)
initn: 1369 init1: 1369 opt: 1369 Z-score: 1583.8 bits: 300.9 E(85289): 1.8e-81
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 209 aa overlap (146-354:9-217)
120 130 140 150 160 170
pF1KB6 VRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASD
::::::::::::::::::::::::::::::
XP_006 MCPTSSLRMTDGAQQALRRTMEIYSKTTRFALACNASD
10 20 30
180 190 200 210 220 230
pF1KB6 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
160 170 180 190 200 210
>>XP_016867982 (OMIM: 600404) PREDICTED: replication fac (217 aa)
initn: 1369 init1: 1369 opt: 1369 Z-score: 1583.8 bits: 300.9 E(85289): 1.8e-81
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 209 aa overlap (146-354:9-217)
120 130 140 150 160 170
pF1KB6 VRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASD
::::::::::::::::::::::::::::::
XP_016 MCPTSSLRMTDGAQQALRRTMEIYSKTTRFALACNASD
10 20 30
180 190 200 210 220 230
pF1KB6 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB6 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
160 170 180 190 200 210
>>XP_011536945 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 678 init1: 573 opt: 740 Z-score: 857.0 bits: 167.0 E(85289): 5.3e-41
Smith-Waterman score: 740; 37.2% identity (70.7% similar) in 317 aa overlap (28-342:12-327)
10 20 30 40 50 60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
:... .::::::::: ::......: .: .
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
10 20 30 40
70 80 90 100 110
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNK
. : : .:.... ::::::::..:: :. : .: ::::::.:::::..:.
XP_011 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
: ::. .. . :: :..::::::.::. ::.::::..: ....::: : :: .:::
XP_011 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
.::::. .:. :: .. :: .:.:.:.: ..::..:.. ..::::.::: ::::
XP_011 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGN
.:: .. :.:. .: . .... .: .. ::. ...: : : . .::. .
XP_011 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 IFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
: . .. ...... ... ..... :.: .:...:.:
XP_011 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
290 300 310 320 330 340
>>XP_011536947 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 678 init1: 573 opt: 740 Z-score: 857.0 bits: 167.0 E(85289): 5.3e-41
Smith-Waterman score: 740; 37.2% identity (70.7% similar) in 317 aa overlap (28-342:12-327)
10 20 30 40 50 60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
:... .::::::::: ::......: .: .
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
10 20 30 40
70 80 90 100 110
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNK
. : : .:.... ::::::::..:: :. : .: ::::::.:::::..:.
XP_011 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
: ::. .. . :: :..::::::.::. ::.::::..: ....::: : :: .:::
XP_011 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
.::::. .:. :: .. :: .:.:.:.: ..::..:.. ..::::.::: ::::
XP_011 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGN
.:: .. :.:. .: . .... .: .. ::. ...: : : . .::. .
XP_011 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 IFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
: . .. ...... ... ..... :.: .:...:.:
XP_011 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
290 300 310 320 330 340
354 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:57:13 2016 done: Fri Nov 4 20:57:15 2016
Total Scan time: 7.920 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]