FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1496, 108 aa 1>>>pF1KE1496 108 - 108 aa - 108 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1565+/-0.000724; mu= 10.1467+/- 0.043 mean_var=70.3432+/-14.056, 0's: 0 Z-trim(109.9): 60 B-trim: 328 in 1/51 Lambda= 0.152920 statistics sampled from 11179 (11231) to 11179 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.345), width: 16 Scan time: 1.270 The best scores are: opt bits E(32554) CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22 ( 108) 797 184.1 1.4e-47 CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3 ( 113) 392 94.8 1.1e-20 CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17 ( 84) 279 69.8 2.9e-13 >>CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22 (108 aa) initn: 797 init1: 797 opt: 797 Z-score: 967.7 bits: 184.1 E(32554): 1.4e-47 Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 10 20 30 40 50 60 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH :::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 70 80 90 100 >>CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3 (113 aa) initn: 392 init1: 220 opt: 392 Z-score: 484.5 bits: 94.8 E(32554): 1.1e-20 Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (11-107:20-112) 10 20 30 40 50 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD ::..:: : : : .:::::::.:.::. :.::::: ..:: CCDS31 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD 10 20 30 40 50 60 70 80 90 100 pF1KE1 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH :..:::.. .:.:.:.:: :::.:: :.: :.: . ::: ...: :. : CCDS31 ACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 60 70 80 90 100 110 >>CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17 (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 351.6 bits: 69.8 E(32554): 2.9e-13 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. CCDS11 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. CCDS11 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 108 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:40:23 2016 done: Mon Nov 7 03:40:23 2016 Total Scan time: 1.270 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]