Result of FASTA (ccds) for
pFN21AB8652
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8652, 201 aa
1>>>pF1KB8652 201 - 201 aa - 201 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4900+/-0.000758; mu= 8.0099+/- 0.046
mean_var=86.3945+/-16.677, 0's: 0 Z-trim(109.9): 18 B-trim: 0 in 0/51
Lambda= 0.137985
statistics sampled from 11203 (11220) to 11203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.345), width: 16
Scan time: 1.640
The best scores are: opt bits E(32554)
CCDS13775.1 RANBP1 gene_id:5902|Hs108|chr22 ( 201) 1335 275.0 2.2e-74
CCDS63408.1 RANBP1 gene_id:5902|Hs108|chr22 ( 200) 1318 271.6 2.3e-73
CCDS74823.1 RANBP1 gene_id:5902|Hs108|chr22 ( 278) 1310 270.1 9.2e-73
CCDS2079.1 RANBP2 gene_id:5903|Hs108|chr2 (3224) 598 128.7 3.8e-29
CCDS46394.1 RGPD8 gene_id:727851|Hs108|chr2 (1765) 478 104.7 3.5e-22
CCDS2082.1 RGPD5 gene_id:84220|Hs108|chr2 (1765) 478 104.7 3.5e-22
CCDS46388.1 RGPD6 gene_id:729540|Hs108|chr2 (1765) 478 104.7 3.5e-22
CCDS46358.2 RGPD1 gene_id:400966|Hs108|chr2 (1748) 476 104.3 4.6e-22
CCDS42710.2 RGPD2 gene_id:729857|Hs108|chr2 (1756) 476 104.3 4.6e-22
CCDS46379.1 RGPD3 gene_id:653489|Hs108|chr2 (1758) 476 104.3 4.6e-22
CCDS46381.1 RGPD4 gene_id:285190|Hs108|chr2 (1758) 466 102.3 1.8e-21
>>CCDS13775.1 RANBP1 gene_id:5902|Hs108|chr22 (201 aa)
initn: 1335 init1: 1335 opt: 1335 Z-score: 1448.9 bits: 275.0 E(32554): 2.2e-74
Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKV
130 140 150 160 170 180
190 200
pF1KB8 AEKLEALSVKEETKEDAEEKQ
:::::::::::::::::::::
CCDS13 AEKLEALSVKEETKEDAEEKQ
190 200
>>CCDS63408.1 RANBP1 gene_id:5902|Hs108|chr22 (200 aa)
initn: 1135 init1: 1135 opt: 1318 Z-score: 1430.7 bits: 271.6 E(32554): 2.3e-73
Smith-Waterman score: 1318; 99.5% identity (99.5% similar) in 201 aa overlap (1-201:1-200)
10 20 30 40 50 60
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKV
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS63 VWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKK-GSGKNDHAEKV
130 140 150 160 170
190 200
pF1KB8 AEKLEALSVKEETKEDAEEKQ
:::::::::::::::::::::
CCDS63 AEKLEALSVKEETKEDAEEKQ
180 190 200
>>CCDS74823.1 RANBP1 gene_id:5902|Hs108|chr22 (278 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1419.8 bits: 270.1 E(32554): 9.2e-73
Smith-Waterman score: 1310; 97.5% identity (99.0% similar) in 201 aa overlap (1-201:78-278)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQFEPI
. ..:::::::::::::::::::::::::
CCDS74 LVLWGCRPKRPRKRRTSLKLAWRGTFCSSSLKISEDTHEDHDTSTENTDESNHDPQFEPI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 VSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 RRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQK
170 180 190 200 210 220
160 170 180 190 200
pF1KB8 FKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
230 240 250 260 270
>>CCDS2079.1 RANBP2 gene_id:5903|Hs108|chr2 (3224 aa)
initn: 762 init1: 304 opt: 598 Z-score: 636.6 bits: 128.7 E(32554): 3.8e-29
Smith-Waterman score: 598; 50.3% identity (74.9% similar) in 199 aa overlap (1-197:1147-1339)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQFEPI
. .:. .:: : .. . :... :.:::.
CCDS20 SSQQKNSGFRRSDDMFTFHGPGKSVFGTPTLETANKNHET-DGGSAHGDDDDDGPHFEPV
1120 1130 1140 1150 1160 1170
40 50 60 70 80
pF1KB8 VSLPEQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLL
: ::.. :.:: ::::::.: ::::::: :. :::::: :.::.:.:: .: ::::
CCDS20 VPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVES--KEWKERGIGNVKILRHKTSGKIRLL
1180 1190 1200 1210 1220 1230
90 100 110 120 130 140
pF1KB8 MRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHA-DFADECPKPELLAIRFLNAENA
:::...:::::::::.: :.: :::::::..:: :: :.::: :::: ::::: . :.:
CCDS20 MRREQVLKICANHYISPDMKLTPNAGSDRSFVW--HALDYADELPKPEQLAIRFKTPEEA
1240 1250 1260 1270 1280 1290
150 160 170 180 190 200
pF1KB8 QKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:: :::: .. .. ... ..: .: ..... . . :. : ::
CCDS20 ALFKCKFEEAQSILKAPGTNVAMASN-QAVRIVKEPTSHDNKDICKSDAGNLNFEFQVAK
1300 1310 1320 1330 1340 1350
CCDS20 KEGSWWHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFAL
1360 1370 1380 1390 1400 1410
>--
initn: 478 init1: 245 opt: 511 Z-score: 543.0 bits: 111.4 E(32554): 6.3e-24
Smith-Waterman score: 511; 51.5% identity (72.7% similar) in 165 aa overlap (3-167:2889-3049)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVS
.: . ::.: : :.. :.: .::::::
CCDS20 GDFAFGSKDKNFQWANTGAAVFGTQSVGTQSAGKVGEDEDGSDEEV-VHNEDIHFEPIVS
2860 2870 2880 2890 2900 2910
40 50 60 70 80 90
pF1KB8 LPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRR
::: :.:. ::::: ::: ::::.:. . :. .:::::.::.:.: : :. :.::::
CCDS20 LPEVEVKSGEEDEEILFKERAKLYRW--DRDVSQWKERGVGDIKILWHTMKNYYRILMRR
2920 2930 2940 2950 2960 2970
100 110 120 130 140 150
pF1KB8 DKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFK
:...:.:::: :: ::::: :. : :: : .:.:: : : ::.:: . : :. ::
CCDS20 DQVFKVCANHVITKTMELKPLNVSNNALVW-TASDYADGEAKVEQLAVRFKTKEVADCFK
2980 2990 3000 3010 3020 3030
160 170 180 190 200
pF1KB8 TKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
::::.... . .:
CCDS20 KTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAE
3040 3050 3060 3070 3080 3090
>--
initn: 612 init1: 268 opt: 496 Z-score: 526.9 bits: 108.4 E(32554): 5e-23
Smith-Waterman score: 496; 43.6% identity (73.4% similar) in 188 aa overlap (6-186:1995-2175)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS20 DPNFKGFSGAGEKLFSSQYGKMANKANTSGDFEKDDDAYKTEDSD----DIHFEPVVQMP
1970 1980 1990 2000 2010 2020
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : ::::. :...:.::::: .: . .::::: :..:.::.. .: .:.::::.
CCDS20 EKVELVTGEEDEKVLYSQRVKLFRFDAE--VSQWKERGLGNLKILKNEVNGKLRMLMRRE
2030 2040 2050 2060 2070
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.: .::.: : : :: .: . : :..::
CCDS20 QVLKVCANHWITTTMNLKPLSGSDRAWMW-LASDFSDGDAKLEQLAAKFKTPELAEEFKQ
2080 2090 2100 2110 2120 2130
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS20 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
2140 2150 2160 2170 2180 2190
CCDS20 GSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDSVSSSSVHASPLASSPVRKNL
2200 2210 2220 2230 2240 2250
>--
initn: 485 init1: 251 opt: 434 Z-score: 460.2 bits: 96.0 E(32554): 2.6e-19
Smith-Waterman score: 434; 43.9% identity (72.3% similar) in 155 aa overlap (12-164:2294-2445)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: .. :.: ..: : :::.: ::. :..
CCDS20 TTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVS
2270 2280 2290 2300 2310 2320
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::::.:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS20 SGEENEQVVFSHRAKLYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
2330 2340 2350 2360 2370 2380
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.:.: : :::: : : ::.:: . :..:: :.: .
CCDS20 ANHRITPDMTLQNMKGTERVWLW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
2390 2400 2410 2420 2430 2440
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS20 TAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVEVSST
2450 2460 2470 2480 2490 2500
>>CCDS46394.1 RGPD8 gene_id:727851|Hs108|chr2 (1765 aa)
initn: 510 init1: 269 opt: 478 Z-score: 511.8 bits: 104.7 E(32554): 3.5e-22
Smith-Waterman score: 478; 42.6% identity (73.4% similar) in 188 aa overlap (6-186:1019-1199)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS46 DLNFKGFSGAGEKLFSSRYGKMANKANTSGDFEKDDDAYKTEDSD----DIHFEPVVQMP
990 1000 1010 1020 1030 1040
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: .:.::::.
CCDS46 EKVELVTGEEGEKVLYSQGVKLFRFDAE--VRQWKERGLGNLKILKNEVNGKLRMLMRRE
1050 1060 1070 1080 1090 1100
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.:.. .::.: : : :: .: . : :..::
CCDS46 QVLKVCANHWITTTMNLKPLSGSDRAWMWSA-SDFSDGDAKLERLAAKFKTPELAEEFKQ
1110 1120 1130 1140 1150 1160
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS46 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
1170 1180 1190 1200 1210 1220
CCDS46 GSGTGVAGASDTTIKPNAENTGPTLEWDNYDLREDALDDSVSSSSVHASPLASSPVRKNL
1230 1240 1250 1260 1270 1280
>--
initn: 373 init1: 255 opt: 425 Z-score: 454.7 bits: 94.2 E(32554): 5.2e-19
Smith-Waterman score: 425; 43.2% identity (71.6% similar) in 155 aa overlap (12-164:1318-1469)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: . :.: ..: : :::.: ::. :..
CCDS46 TTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVS
1290 1300 1310 1320 1330 1340
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::...:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS46 SGEENEQVVFSHRAEIYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
1350 1360 1370 1380 1390 1400
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS46 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1410 1420 1430 1440 1450 1460
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS46 TAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEEITRERTDVIQGDDVADAASEVEVSST
1470 1480 1490 1500 1510 1520
>>CCDS2082.1 RGPD5 gene_id:84220|Hs108|chr2 (1765 aa)
initn: 510 init1: 269 opt: 478 Z-score: 511.8 bits: 104.7 E(32554): 3.5e-22
Smith-Waterman score: 478; 42.6% identity (73.4% similar) in 188 aa overlap (6-186:1019-1199)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS20 DLNFKGFSGAGEKLFSSRYGKMANKANTSGDFEKDDDAYKTEDSD----DIHFEPVVQMP
990 1000 1010 1020 1030 1040
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: .:.::::.
CCDS20 EKVELVTGEEGEKVLYSQGVKLFRFDAE--VRQWKERGLGNLKILKNEVNGKLRMLMRRE
1050 1060 1070 1080 1090 1100
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.:.. .::.: : : :: .: . : :..::
CCDS20 QVLKVCANHWITTTMNLKPLSGSDRAWMWSA-SDFSDGDAKLERLAAKFKTPELAEEFKQ
1110 1120 1130 1140 1150 1160
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS20 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
1170 1180 1190 1200 1210 1220
CCDS20 GSGTGAAGASDTTIKPNAENTGPTLEWDNYDLREDALDDSVSSSSVHASPLASSPVRKNL
1230 1240 1250 1260 1270 1280
>--
initn: 373 init1: 255 opt: 425 Z-score: 454.7 bits: 94.2 E(32554): 5.2e-19
Smith-Waterman score: 425; 43.2% identity (71.6% similar) in 155 aa overlap (12-164:1318-1469)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: . :.: ..: : :::.: ::. :..
CCDS20 TTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVS
1290 1300 1310 1320 1330 1340
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::...:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS20 SGEENEQVVFSHRAEIYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
1350 1360 1370 1380 1390 1400
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS20 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1410 1420 1430 1440 1450 1460
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS20 TAQEKDSLITPHVSRSSTPRESPCGKIAVAILEETTRERTDVIQGDDVADAASEVEVSST
1470 1480 1490 1500 1510 1520
>>CCDS46388.1 RGPD6 gene_id:729540|Hs108|chr2 (1765 aa)
initn: 510 init1: 269 opt: 478 Z-score: 511.8 bits: 104.7 E(32554): 3.5e-22
Smith-Waterman score: 478; 42.6% identity (73.4% similar) in 188 aa overlap (6-186:1019-1199)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS46 DLNFKGFSGAGEKLFSSRYGKMANKANTSGDFEKDDDAYKTEDSD----DIHFEPVVQMP
990 1000 1010 1020 1030 1040
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: .:.::::.
CCDS46 EKVELVTGEEGEKVLYSQGVKLFRFDAE--VRQWKERGLGNLKILKNEVNGKLRMLMRRE
1050 1060 1070 1080 1090 1100
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.:.. .::.: : : :: .: . : :..::
CCDS46 QVLKVCANHWITTTMNLKPLSGSDRAWMWSA-SDFSDGDAKLERLAAKFKTPELAEEFKQ
1110 1120 1130 1140 1150 1160
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS46 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
1170 1180 1190 1200 1210 1220
CCDS46 GSGTGAAGASDTTIKPNAENTGPTLEWDNYDLREDALDDSVSSSSVHASPLASSPVRKNL
1230 1240 1250 1260 1270 1280
>--
initn: 373 init1: 255 opt: 425 Z-score: 454.7 bits: 94.2 E(32554): 5.2e-19
Smith-Waterman score: 425; 43.2% identity (71.6% similar) in 155 aa overlap (12-164:1318-1469)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: . :.: ..: : :::.: ::. :..
CCDS46 TTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVS
1290 1300 1310 1320 1330 1340
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::...:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS46 SGEENEQVVFSHRAEIYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
1350 1360 1370 1380 1390 1400
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS46 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1410 1420 1430 1440 1450 1460
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS46 TAQEKDSLITPHVSRSSTPRESPCGKIAVAILEETTRERTDVIQGDDVADAASEVEVSST
1470 1480 1490 1500 1510 1520
>>CCDS46358.2 RGPD1 gene_id:400966|Hs108|chr2 (1748 aa)
initn: 508 init1: 269 opt: 476 Z-score: 509.7 bits: 104.3 E(32554): 4.6e-22
Smith-Waterman score: 476; 43.1% identity (71.8% similar) in 188 aa overlap (6-186:1004-1184)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS46 DPNFKGFSGAGEKLFSSQCGKMANKANTSGDFEKDDDACKTEDSD----DIHFEPVVQMP
980 990 1000 1010 1020
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: :.:::::
CCDS46 EKVELVTGEEGEKVLYSQGVKLFRFDAE--ISQWKERGLGNLKILKNEVNGKPRMLMRRD
1030 1040 1050 1060 1070 1080
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.: .::.: : : :: .: . : :..::
CCDS46 QVLKVCANHWITTTMNLKPLSGSDRAWMW-LASDFSDGDAKLERLAAQFKTPELAEEFKQ
1090 1100 1110 1120 1130 1140
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS46 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
1150 1160 1170 1180 1190 1200
CCDS46 GSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDNVSSSSVHDSPLASSPVRKNI
1210 1220 1230 1240 1250 1260
>--
initn: 377 init1: 255 opt: 433 Z-score: 463.4 bits: 95.7 E(32554): 1.7e-19
Smith-Waterman score: 433; 43.9% identity (72.3% similar) in 155 aa overlap (12-164:1303-1454)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: .. :.: ..: : :::.: ::. :..
CCDS46 TTGFNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVS
1280 1290 1300 1310 1320 1330
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::.:.:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS46 SGEENEQVVFSHRAELYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
1340 1350 1360 1370 1380 1390
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS46 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1400 1410 1420 1430 1440
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS46 TAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSST
1450 1460 1470 1480 1490 1500
>>CCDS42710.2 RGPD2 gene_id:729857|Hs108|chr2 (1756 aa)
initn: 508 init1: 269 opt: 476 Z-score: 509.6 bits: 104.3 E(32554): 4.6e-22
Smith-Waterman score: 476; 43.1% identity (71.8% similar) in 188 aa overlap (6-186:1012-1192)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS42 DPNFKGFSGAGEKLFSSQCGKMANKANTSGDFEKDDDACKTEDSD----DIHFEPVVQMP
990 1000 1010 1020 1030
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: :.:::::
CCDS42 EKVELVTGEEGEKVLYSQGVKLFRFDAE--ISQWKERGLGNLKILKNEVNGKPRMLMRRD
1040 1050 1060 1070 1080 1090
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.: .::.: : : :: .: . : :..::
CCDS42 QVLKVCANHWITTTMNLKPLSGSDRAWMW-LASDFSDGDAKLERLAAQFKTPELAEEFKQ
1100 1110 1120 1130 1140 1150
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS42 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVTEEENK
1160 1170 1180 1190 1200 1210
CCDS42 GSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDNVSSSSVHDSPLASSPVRKNI
1220 1230 1240 1250 1260 1270
>--
initn: 382 init1: 255 opt: 424 Z-score: 453.7 bits: 94.0 E(32554): 6e-19
Smith-Waterman score: 424; 43.2% identity (71.6% similar) in 155 aa overlap (12-164:1311-1462)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: .. :.: ..: : :::.: ::. :..
CCDS42 TTGFNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVS
1290 1300 1310 1320 1330 1340
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. :.:.:. ..:. .::::: ::.:.:.. .. .:..::::..::.:
CCDS42 SGEENEQVVFSHMAELYRY--DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLC
1350 1360 1370 1380 1390
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS42 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1400 1410 1420 1430 1440 1450
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS42 TAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSST
1460 1470 1480 1490 1500 1510
>>CCDS46379.1 RGPD3 gene_id:653489|Hs108|chr2 (1758 aa)
initn: 506 init1: 265 opt: 476 Z-score: 509.6 bits: 104.3 E(32554): 4.6e-22
Smith-Waterman score: 476; 42.0% identity (73.4% similar) in 188 aa overlap (6-186:1020-1200)
10 20 30
pF1KB8 MAAAKDTHEDHDT-STENTDESNHDPQFEPIVSLP
: ..: :. .::..: : .:::.:..:
CCDS46 DLNFKGFSGAGEKLFSSQYGKMANKANTSGDFEKDDDAYKTEDSD----DIHFEPVVQMP
990 1000 1010 1020 1030 1040
40 50 60 70 80 90
pF1KB8 EQ-EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD
:. :. : :: :. :... .::::: .: . .::::: :..:.::.. .: .:.::.:.
CCDS46 EKVELVTGEEGEKVLYSQGVKLFRFDAE--VSQWKERGLGNLKILKNEVNGKVRMLMQRE
1050 1060 1070 1080 1090 1100
100 110 120 130 140 150
pF1KB8 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKT
..::.::::.:: :.::: .::::::.:.. .::.: : : :: .: . : :..::
CCDS46 QVLKVCANHWITTTMNLKPLSGSDRAWMWSA-SDFSDGDAKLERLAAKFKTPELAEEFKQ
1110 1120 1130 1140 1150 1160
160 170 180 190 200
pF1KB8 KFEECRK-----EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:::::.. .. .: . .:. . . ::....
CCDS46 KFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVAEEENK
1170 1180 1190 1200 1210 1220
CCDS46 GSGTGAAGASDTTIKPNAENTGPTLEWDNYDLREDALDDSVSSSSVHASPLASSPVRKNL
1230 1240 1250 1260 1270 1280
>--
initn: 376 init1: 258 opt: 432 Z-score: 462.3 bits: 95.6 E(32554): 2e-19
Smith-Waterman score: 432; 43.9% identity (72.3% similar) in 155 aa overlap (12-164:1319-1470)
10 20 30
pF1KB8 MAAAKDTHEDHDTSTENTDESNHDPQ-FEPIVSLPEQ-EIK
: .. :.: ..: : :::.: ::. :..
CCDS46 TTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVS
1290 1300 1310 1320 1330 1340
40 50 60 70 80 90
pF1KB8 TLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKIC
. ::.:. .:. ::...:. ..:. .::::: ::.:.:.. .. .:.:::::..::.:
CCDS46 SGEENEQVVFSHRAEFYRY--DKDVGQWKERGIGDIKILQNYDNKHVRILMRRDQVLKLC
1350 1360 1370 1380 1390 1400
100 110 120 130 140 150
pF1KB8 ANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR
::: ::: : :. :..:.::: : :::: : : ::.:: . :..:: :.: .
CCDS46 ANHRITPDMSLQNMKGTERVWVW-TACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAK
1410 1420 1430 1440 1450 1460
160 170 180 190 200
pF1KB8 KEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
:.
CCDS46 TAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSST
1470 1480 1490 1500 1510 1520
201 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:42:14 2016 done: Sat Nov 5 21:42:15 2016
Total Scan time: 1.640 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]