FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6147, 145 aa
  1>>>pF1KE6147 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5953+/-0.000787; mu= 8.9968+/- 0.047
 mean_var=55.3255+/-11.073, 0's: 0 Z-trim(106.2): 9  B-trim: 0 in 0/50
 Lambda= 0.172430
 statistics sampled from 8875 (8876) to 8875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.110

The best scores are:                                      opt bits E(32554)
CCDS8359.1 PTS gene_id:5805|Hs108|chr11            ( 145)  966 248.2 1.3e-66


>>CCDS8359.1 PTS gene_id:5805|Hs108|chr11                 (145 aa)
 initn: 966 init1: 966 opt: 966  Z-score: 1309.3  bits: 248.2 E(32554): 1.3e-66
Smith-Waterman score: 966; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GEIDPATGMVMNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQK
               70        80        90       100       110       120

              130       140     
pF1KE6 VLPVGVLYKVKVYETDNNIVVYKGE
       :::::::::::::::::::::::::
CCDS83 VLPVGVLYKVKVYETDNNIVVYKGE
              130       140     




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:51:54 2016 done: Tue Nov  8 09:51:54 2016
 Total Scan time:  1.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]