Result of FASTA (omim) for
pFN21AB6813
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6813, 160 aa
1>>>pF1KB6813 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5376+/-0.00029; mu= 11.3459+/- 0.018
mean_var=80.3723+/-15.803, 0's: 0 Z-trim(117.9): 17 B-trim: 245 in 1/57
Lambda= 0.143061
statistics sampled from 30398 (30415) to 30398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.357), width: 16
Scan time: 4.680
The best scores are: opt bits E(85289)
NP_006592 (OMIM: 607061) prostaglandin E synthase ( 160) 1146 245.3 3e-65
XP_005268633 (OMIM: 607061) PREDICTED: prostagland ( 164) 1139 243.9 8.4e-65
NP_001269533 (OMIM: 607061) prostaglandin E syntha ( 164) 1139 243.9 8.4e-65
XP_011536075 (OMIM: 607061) PREDICTED: prostagland ( 161) 1050 225.5 2.8e-59
XP_016874205 (OMIM: 607061) PREDICTED: prostagland ( 165) 1043 224.1 7.8e-59
NP_001269530 (OMIM: 607061) prostaglandin E syntha ( 139) 906 195.8 2.2e-50
XP_011536076 (OMIM: 607061) PREDICTED: prostagland ( 143) 899 194.3 6.2e-50
NP_001269531 (OMIM: 607061) prostaglandin E syntha ( 130) 687 150.6 8.5e-37
XP_006719262 (OMIM: 607061) PREDICTED: prostagland ( 134) 680 149.1 2.4e-36
NP_001269534 (OMIM: 607061) prostaglandin E syntha ( 109) 675 148.0 4.1e-36
NP_001269532 (OMIM: 607061) prostaglandin E syntha ( 127) 472 106.2 1.9e-23
>>NP_006592 (OMIM: 607061) prostaglandin E synthase 3 is (160 aa)
initn: 1146 init1: 1146 opt: 1146 Z-score: 1292.3 bits: 245.3 E(85289): 3e-65
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
70 80 90 100 110 120
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::
NP_006 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
130 140 150 160
>>XP_005268633 (OMIM: 607061) PREDICTED: prostaglandin E (164 aa)
initn: 1139 init1: 1139 opt: 1139 Z-score: 1284.4 bits: 243.9 E(85289): 8.4e-65
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
130 140 150 160
>>NP_001269533 (OMIM: 607061) prostaglandin E synthase 3 (164 aa)
initn: 1139 init1: 1139 opt: 1139 Z-score: 1284.4 bits: 243.9 E(85289): 8.4e-65
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLEKQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
130 140 150 160
>>XP_011536075 (OMIM: 607061) PREDICTED: prostaglandin E (161 aa)
initn: 1077 init1: 1050 opt: 1050 Z-score: 1185.2 bits: 225.5 E(85289): 2.8e-59
Smith-Waterman score: 1050; 99.3% identity (99.3% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
70 80 90 100 110 120
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
:::::::::::::::::::::::::: :
XP_011 DRFSEMMNNMGGDEDVDLPEVDGADDVSLKILFSVYFHTIK
130 140 150 160
>>XP_016874205 (OMIM: 607061) PREDICTED: prostaglandin E (165 aa)
initn: 1070 init1: 1043 opt: 1043 Z-score: 1177.3 bits: 224.1 E(85289): 7.8e-59
Smith-Waterman score: 1043; 99.3% identity (99.3% similar) in 147 aa overlap (2-148:6-152)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
:::::::::::::::::::::::::::::: :
XP_016 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDVSLKILFSVYFHTIK
130 140 150 160
>>NP_001269530 (OMIM: 607061) prostaglandin E synthase 3 (139 aa)
initn: 901 init1: 901 opt: 906 Z-score: 1025.5 bits: 195.8 E(85289): 2.2e-50
Smith-Waterman score: 945; 86.9% identity (86.9% similar) in 160 aa overlap (1-160:1-139)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
70 80 90 100 110 120
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::: ::::::::::::::
NP_001 DRFSE---------------------DSQDSDDEKMPDLE
130
>>XP_011536076 (OMIM: 607061) PREDICTED: prostaglandin E (143 aa)
initn: 894 init1: 894 opt: 899 Z-score: 1017.5 bits: 194.3 E(85289): 6.2e-50
Smith-Waterman score: 938; 86.8% identity (86.8% similar) in 159 aa overlap (2-160:6-143)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::: ::::::::::::::
XP_011 MSNFDRFSE---------------------DSQDSDDEKMPDLE
130 140
>>NP_001269531 (OMIM: 607061) prostaglandin E synthase 3 (130 aa)
initn: 692 init1: 677 opt: 687 Z-score: 781.6 bits: 150.6 E(85289): 8.5e-37
Smith-Waterman score: 850; 81.2% identity (81.2% similar) in 160 aa overlap (1-160:1-130)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
:::::::::::::::::::::::::::::::::::
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK-------------------------
70 80 90
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
:::::::::::::::::::::::::::::::::::
NP_001 -----MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
100 110 120 130
>>XP_006719262 (OMIM: 607061) PREDICTED: prostaglandin E (134 aa)
initn: 685 init1: 670 opt: 680 Z-score: 773.6 bits: 149.1 E(85289): 2.4e-36
Smith-Waterman score: 843; 81.1% identity (81.1% similar) in 159 aa overlap (2-160:6-134)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
:::::::::::::::::::::::::::::::::::::::
XP_006 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK---------------------
70 80 90
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
:::::::::::::::::::::::::::::::::::
XP_006 ---------MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
100 110 120 130
>>NP_001269534 (OMIM: 607061) prostaglandin E synthase 3 (109 aa)
initn: 757 init1: 674 opt: 675 Z-score: 769.3 bits: 148.0 E(85289): 4.1e-36
Smith-Waterman score: 678; 82.6% identity (87.6% similar) in 121 aa overlap (1-121:1-109)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::: : .:..:: : ..
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK------------DSQDSDDEKMPDL
70 80 90 100
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
.
NP_001 E
160 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:02:48 2016 done: Sat Nov 5 00:02:48 2016
Total Scan time: 4.680 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]