(Circular) (Six-base) MAPSORT of: pFN21AB6455.seq Check: 9750 from: 1 to: 5659 pFN21AB6455 5659 bp With 182 enzymes: SgfI * October 20, 2009 10:40 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2351 2351 Size: 5659 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3469 278 Size: 53 83 186 936 1933 2468 Fragments arranged by size: 2468 1933 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2163 2430 3002 1937 Size: 226 267 572 4594 Fragments arranged by size: 4594 572 267 226 Acc65I G'GTAC_C Cuts at: 2980 2980 Size: 5659 AclI AA'CG_TT Cuts at: 1563 3786 4159 1563 Size: 2223 373 3063 Fragments arranged by size: 3063 2223 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2008 2229 3722 5106 5374 1632 Size: 376 221 1493 1384 268 1917 Fragments arranged by size: 1917 1493 1384 376 268 221 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5462 AflIII A'CryG_T Cuts at: 1203 4558 5535 1203 Size: 3355 977 1327 Fragments arranged by size: 3355 1327 977 AgeI A'CCGG_T Cuts at: 4490 4490 Size: 5659 AhdI GACnn_n'nnGTC Cuts at: 4388 4388 Size: 5659 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5659 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5659 AlwNI CAG_nnn'CTG Cuts at: 3402 4974 3402 Size: 1572 4087 ApaLI G'TGCA_C Cuts at: 3716 4872 3716 Size: 1156 4503 ApoI r'AATT_y Cuts at: 1493 2105 2403 2968 3194 3346 5455 1493 Size: 612 298 565 226 152 2109 1697 Fragments arranged by size: 2109 1697 612 565 298 226 152 AseI AT'TA_AT Cuts at: 160 1032 2226 4213 160 Size: 872 1194 1987 1606 Fragments arranged by size: 1987 1606 1194 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5659 AvaI C'yCGr_G Cuts at: 1870 1943 2984 1870 Size: 73 1041 4545 Fragments arranged by size: 4545 1041 73 BamHI G'GATC_C Cuts at: 2989 3356 2989 Size: 367 5292 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2317 2723 2980 4435 618 Size: 325 217 627 530 406 257 1455 1842 Fragments arranged by size: 1842 1455 627 530 406 325 257 217 BanII G_rGCy'C Cuts at: 1391 2978 1391 Size: 1587 4072 BbeI G_GCGC'C Cuts at: 2321 2727 2321 Size: 406 5253 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4688 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3850 3884 1903 Size: 34 50 34 1829 34 3678 Fragments arranged by size: 3678 1829 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3551 4761 3551 Size: 1210 4449 BclI T'GATC_A Cuts at: 1548 2217 1548 Size: 669 4990 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4270 136 Size: 107 122 71 631 605 2598 1525 Fragments arranged by size: 2598 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5654 5654 Size: 5659 BlpI GC'TnA_GC Cuts at: 3076 3076 Size: 5659 Bme1580I G_kGCm'C Cuts at: 1790 3720 4876 1790 Size: 1930 1156 2573 Fragments arranged by size: 2573 1930 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5659 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2420 3390 4348 Size: 416 53 83 399 24 1003 970 958 Cuts at: 4348 442 Size: 1753 Fragments arranged by size: 1753 1003 970 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5659 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2497 2497 Size: 5659 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2099 4319 1239 Size: 860 2220 2579 Fragments arranged by size: 2579 2220 860 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3784 4649 4947 3784 Size: 865 298 4496 Fragments arranged by size: 4496 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2114 4322 882 Size: 617 615 2208 2219 Fragments arranged by size: 2219 2208 617 615 BsaAI yAC'GTr Cuts at: 493 1204 2150 3450 493 Size: 711 946 1300 2702 Fragments arranged by size: 2702 1300 946 711 BsaBI GATnn'nnATC Cuts at: 2876 5653 2876 Size: 2777 2882 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2318 2724 3466 3848 Size: 53 83 186 936 785 406 742 382 Cuts at: 3848 4483 275 Size: 635 1451 Fragments arranged by size: 1451 936 785 742 635 406 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2765 4092 4490 4764 4911 5322 2765 Size: 1327 398 274 147 411 3102 Fragments arranged by size: 3102 1327 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2145 2175 2913 2943 1178 Size: 30 165 30 742 30 738 30 3894 Fragments arranged by size: 3894 742 738 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5659 BseYI C'CCAG_C Cuts at: 4862 5358 4862 Size: 496 5163 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2385 2482 1163 Size: 573 649 97 4340 Fragments arranged by size: 4340 649 573 97 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3109 3870 4898 1540 Size: 275 186 1108 761 1028 2301 Fragments arranged by size: 2301 1108 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3720 3805 4876 3720 Size: 85 1071 4503 Fragments arranged by size: 4503 1071 85 BsmI GAATG_Cn' Cuts at: 3170 3263 3170 Size: 93 5566 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2978 3720 3805 4876 1391 Size: 399 1188 742 85 1071 2174 Fragments arranged by size: 2174 1188 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5322 5322 Size: 5659 BspHI T'CATG_A Cuts at: 2220 3548 5278 2220 Size: 1328 1730 2601 Fragments arranged by size: 2601 1730 1328 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2351 3014 844 Size: 1507 663 3489 Fragments arranged by size: 3489 1507 663 BsrBI CCG'CTC Cuts at: 1394 1823 3546 1394 Size: 429 1723 3507 Fragments arranged by size: 3507 1723 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2544 2851 4154 4328 65 Size: 1183 1296 307 1303 174 1396 Fragments arranged by size: 1396 1303 1296 1183 307 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2449 4303 4490 1700 Size: 110 639 1854 187 2869 Fragments arranged by size: 2869 1854 639 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5659 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5659 BssSI C'ACGA_G Cuts at: 3719 4731 3719 Size: 1012 4647 BstAPI GCAn_nnn'nTGC Cuts at: 794 2691 794 Size: 1897 3762 BstBI TT'CG_AA Cuts at: 4463 4463 Size: 5659 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5659 BstXI CCAn_nnnn'nTGG Cuts at: 2608 2659 2608 Size: 51 5608 BstYI r'GATC_y Cuts at: 1972 2989 3356 3741 3758 5210 5296 5308 5654 Size: 1017 367 385 17 1452 86 12 346 Cuts at: 5654 1972 Size: 1977 Fragments arranged by size: 1977 1452 1017 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2832 2832 Size: 5659 BtgI C'CryG_G Cuts at: 513 1065 2382 513 Size: 552 1317 3790 Fragments arranged by size: 3790 1317 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4920 Fragments arranged by size: 4920 683 56 BtsI GCAGTG_nn' Cuts at: 3175 3969 3989 3175 Size: 794 20 4845 Fragments arranged by size: 4845 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5659 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5624 DraI TTT'AAA Cuts at: 2963 2963 Size: 5659 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4666 809 Size: 507 3350 1802 Fragments arranged by size: 3350 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2649 3106 3995 Size: 54 1425 50 275 18 819 457 889 Cuts at: 3995 5624 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 819 457 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3106 1537 Size: 275 1294 4090 Fragments arranged by size: 4090 1294 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3589 1353 Size: 2236 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4246 4620 4766 387 Size: 1064 138 2657 374 146 1280 Fragments arranged by size: 2657 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2008 2099 2229 3722 4319 5106 5374 Size: 393 376 91 130 1493 597 787 268 Cuts at: 5374 1239 Size: 1524 Fragments arranged by size: 1524 1493 787 597 393 376 268 130 91 EcoRI G'AATT_C Cuts at: 2968 3346 2968 Size: 378 5281 EcoRV GAT'ATC Cuts at: 2422 2422 Size: 5659 FspI TGC'GCA Cuts at: 4165 4165 Size: 5659 HaeII r_GCGC'y Cuts at: 1678 2321 2727 4806 1678 Size: 643 406 2079 2531 Fragments arranged by size: 2531 2079 643 406 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2145 2177 4300 4332 4374 Size: 32 135 32 573 32 2123 32 42 Cuts at: 4374 4406 1373 Size: 32 2626 Fragments arranged by size: 2626 2123 573 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3003 3249 669 Size: 988 281 1065 246 3079 Fragments arranged by size: 3079 1065 988 281 246 HindIII A'AGCT_T Cuts at: 748 2333 748 Size: 1585 4074 HpaI GTT'AAC Cuts at: 3249 3249 Size: 5659 KasI G'GCGC_C Cuts at: 2317 2723 2317 Size: 406 5253 KpnI G_GTAC'C Cuts at: 2984 2984 Size: 5659 MfeI C'AATT_G Cuts at: 3258 3258 Size: 5659 MluI A'CGCG_T Cuts at: 5535 5535 Size: 5659 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4773 4957 1305 Size: 3468 184 2007 Fragments arranged by size: 3468 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2651 10 Size: 54 1425 343 819 3018 Fragments arranged by size: 3018 1425 819 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2657 2882 3617 3976 4135 518 Size: 648 1491 225 735 359 159 2042 Fragments arranged by size: 2042 1491 735 648 359 225 159 MspA1I CmG'CkG Cuts at: 1606 2028 2702 2720 3075 3752 4900 5145 1606 Size: 422 674 18 355 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 674 422 355 245 18 NaeI GCC'GGC Cuts at: 2451 2451 Size: 5659 NarI GG'CG_CC Cuts at: 2318 2724 2318 Size: 406 5253 NcoI C'CATG_G Cuts at: 513 1065 2382 513 Size: 552 1317 3790 Fragments arranged by size: 3790 1317 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5659 NgoMIV G'CCGG_C Cuts at: 2449 2449 Size: 5659 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5659 NotI GC'GGCC_GC Cuts at: 3106 3106 Size: 5659 NspI r_CATG'y Cuts at: 1132 1229 2396 2799 3017 4562 1132 Size: 97 1167 403 218 1545 2229 Fragments arranged by size: 2229 1545 1167 403 218 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5659 PciI A'CATG_T Cuts at: 4558 4558 Size: 5659 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5659 PmeI GTTT'AAAC Cuts at: 2963 2963 Size: 5659 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3728 3760 5241 5273 3728 Size: 32 1481 32 4114 Fragments arranged by size: 4114 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5659 PsiI TTA'TAA Cuts at: 3229 3229 Size: 5659 PstI C_TGCA'G Cuts at: 830 2266 3011 830 Size: 1436 745 3478 Fragments arranged by size: 3478 1436 745 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5659 PvuII CAG'CTG Cuts at: 2702 2720 2702 Size: 18 5641 SalI G'TCGA_C Cuts at: 1936 3001 1936 Size: 1065 4594 SbfI CC_TGCA'GG Cuts at: 3011 3011 Size: 5659 ScaI AGT'ACT Cuts at: 3907 5619 3907 Size: 1712 3947 SfcI C'TryA_G Cuts at: 826 1045 2262 2355 3007 4142 4823 5014 826 Size: 219 1217 93 652 1135 681 191 1471 Fragments arranged by size: 1471 1217 1135 681 652 219 191 93 SfoI GGC'GCC Cuts at: 2319 2725 2319 Size: 406 5253 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5659 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5659 SmaI CCC'GGG Cuts at: 1872 2986 1872 Size: 1114 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3763 4664 4926 820 Size: 197 926 1820 901 262 1553 Fragments arranged by size: 1820 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3450 493 Size: 2957 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5659 SphI G_CATG'C Cuts at: 1132 2799 3017 1132 Size: 1667 218 3774 Fragments arranged by size: 3774 1667 218 SspI AAT'ATT Cuts at: 5 52 3583 5 Size: 47 3531 2081 Fragments arranged by size: 3531 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5659 StyI C'CwwG_G Cuts at: 513 1065 2382 3098 513 Size: 552 1317 716 3074 Fragments arranged by size: 3074 1317 716 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3686 3703 3856 4041 4486 325 Size: 1255 2106 17 153 185 445 1498 Fragments arranged by size: 2106 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3905 5617 96 Size: 274 80 33 51 1443 1928 1712 138 Fragments arranged by size: 1928 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5619 5651 5619 Size: 32 5627 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5659 XbaI T'CTAG_A Cuts at: 2995 2995 Size: 5659 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5659 XmaI C'CCGG_G Cuts at: 1870 2984 1870 Size: 1114 4545 XmnI GAAnn'nnTTC Cuts at: 3788 3788 Size: 5659 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3467 276 Size: 53 83 186 936 1933 2468 Fragments arranged by size: 2468 1933 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstZ17I DraIII EcoICRI EcoNI EcoO109I FalI FseI FspAI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI XcmI