(Circular) (Six-base) MAPSORT of: pFN21AB5401.seq Check: 3595 from: 1 to: 5494 pFN21AB5401 5494 bp With 182 enzymes: SgfI * February 27, 2009 14:45 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2380 2380 Size: 5494 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3304 278 Size: 53 83 186 936 1768 2468 Fragments arranged by size: 2468 1768 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2837 1937 Size: 900 4594 Acc65I G'GTAC_C Cuts at: 2815 2815 Size: 5494 AclI AA'CG_TT Cuts at: 1563 3621 3994 1563 Size: 2058 373 3063 Fragments arranged by size: 3063 2058 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2385 3557 4941 5209 1632 Size: 753 1172 1384 268 1917 Fragments arranged by size: 1917 1384 1172 753 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5297 AflIII A'CryG_T Cuts at: 1203 4393 5370 1203 Size: 3190 977 1327 Fragments arranged by size: 3190 1327 977 AgeI A'CCGG_T Cuts at: 4325 4325 Size: 5494 AhdI GACnn_n'nnGTC Cuts at: 4223 4223 Size: 5494 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5494 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5494 AlwNI CAG_nnn'CTG Cuts at: 2211 2329 3237 4809 2211 Size: 118 908 1572 2896 Fragments arranged by size: 2896 1572 908 118 ApaI G_GGCC'C Cuts at: 2244 2244 Size: 5494 ApaLI G'TGCA_C Cuts at: 3551 4707 3551 Size: 1156 4338 ApoI r'AATT_y Cuts at: 1493 2803 3029 3181 5290 1493 Size: 1310 226 152 2109 1697 Fragments arranged by size: 2109 1697 1310 226 152 AseI AT'TA_AT Cuts at: 160 1032 4048 160 Size: 872 3016 1606 Fragments arranged by size: 3016 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5494 AvaI C'yCGr_G Cuts at: 1870 1943 2819 1870 Size: 73 876 4545 Fragments arranged by size: 4545 876 73 BamHI G'GATC_C Cuts at: 2824 3191 2824 Size: 367 5127 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2815 4270 618 Size: 325 217 627 1028 1455 1842 Fragments arranged by size: 1842 1455 1028 627 325 217 BanII G_rGCy'C Cuts at: 1391 2244 2813 1391 Size: 853 569 4072 Fragments arranged by size: 4072 853 569 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2711 928 Size: 971 812 3711 Fragments arranged by size: 3711 971 812 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3685 3719 1903 Size: 34 50 34 1664 34 3678 Fragments arranged by size: 3678 1664 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3386 4596 3386 Size: 1210 4284 BclI T'GATC_A Cuts at: 1548 2541 2617 1548 Size: 993 76 4425 Fragments arranged by size: 4425 993 76 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4105 136 Size: 107 122 71 631 605 2433 1525 Fragments arranged by size: 2433 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5489 5489 Size: 5494 BlpI GC'TnA_GC Cuts at: 2911 2911 Size: 5494 Bme1580I G_kGCm'C Cuts at: 1790 2244 3555 4711 1790 Size: 454 1311 1156 2573 Fragments arranged by size: 2573 1311 1156 454 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5494 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3225 4183 442 Size: 416 53 83 399 24 1808 958 1753 Fragments arranged by size: 1808 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5494 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2335 2335 Size: 5494 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2091 2718 4154 1239 Size: 852 627 1436 2579 Fragments arranged by size: 2579 1436 852 627 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3619 4484 4782 3619 Size: 865 298 4331 Fragments arranged by size: 4331 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2306 4157 882 Size: 617 807 1851 2219 Fragments arranged by size: 2219 1851 807 617 BsaAI yAC'GTr Cuts at: 493 1204 2518 3285 493 Size: 711 1314 767 2702 Fragments arranged by size: 2702 1314 767 711 BsaBI GATnn'nnATC Cuts at: 2456 2540 5488 2456 Size: 84 2948 2462 Fragments arranged by size: 2948 2462 84 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2271 3301 3683 4318 Size: 53 83 186 936 738 1030 382 635 Cuts at: 4318 275 Size: 1451 Fragments arranged by size: 1451 1030 936 738 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3927 4325 4599 4746 5157 3927 Size: 398 274 147 411 4264 Fragments arranged by size: 4264 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2102 2132 1178 Size: 30 165 30 699 30 4540 Fragments arranged by size: 4540 699 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5494 BseYI C'CCAG_C Cuts at: 2521 4697 5193 2521 Size: 2176 496 2822 Fragments arranged by size: 2822 2176 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2397 2408 2462 1163 Size: 573 661 11 54 4195 Fragments arranged by size: 4195 661 573 54 11 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2944 3705 4733 1540 Size: 275 186 943 761 1028 2301 Fragments arranged by size: 2301 1028 943 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3555 3640 4711 3555 Size: 85 1071 4338 Fragments arranged by size: 4338 1071 85 BsmI GAATG_Cn' Cuts at: 2027 3005 3098 2027 Size: 978 93 4423 Fragments arranged by size: 4423 978 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2244 2813 3555 3640 4711 1391 Size: 399 454 569 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 569 454 399 85 BspEI T'CCGG_A Cuts at: 5157 5157 Size: 5494 BspHI T'CATG_A Cuts at: 3383 5113 3383 Size: 1730 3764 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2307 2380 2849 844 Size: 1463 73 469 3489 Fragments arranged by size: 3489 1463 469 73 BsrBI CCG'CTC Cuts at: 1394 1823 2166 2420 3381 1394 Size: 429 343 254 961 3507 Fragments arranged by size: 3507 961 429 343 254 BsrDI GCAATG_nn' Cuts at: 65 1248 2547 3989 4163 65 Size: 1183 1299 1442 174 1396 Fragments arranged by size: 1442 1396 1299 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2195 2267 4138 4325 1700 Size: 110 385 72 1871 187 2869 Fragments arranged by size: 2869 1871 385 187 110 72 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5494 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5494 BssSI C'ACGA_G Cuts at: 3554 4566 3554 Size: 1012 4482 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5494 BstBI TT'CG_AA Cuts at: 4298 4298 Size: 5494 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5494 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 5494 BstYI r'GATC_y Cuts at: 1972 2066 2824 3191 3576 3593 5045 5131 5143 Size: 94 758 367 385 17 1452 86 12 Cuts at: 5143 5489 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 758 385 367 346 94 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2745 2745 Size: 5494 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4942 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4755 Fragments arranged by size: 4755 683 56 BtsI GCAGTG_nn' Cuts at: 3010 3804 3824 3010 Size: 794 20 4680 Fragments arranged by size: 4680 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5494 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5459 DraI TTT'AAA Cuts at: 2798 2798 Size: 5494 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4501 809 Size: 507 3185 1802 Fragments arranged by size: 3185 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2092 2941 3830 Size: 54 1425 50 275 18 262 849 889 Cuts at: 3830 5459 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 849 275 262 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2941 1537 Size: 275 1129 4090 Fragments arranged by size: 4090 1129 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3424 1353 Size: 2071 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4081 4455 4601 387 Size: 1064 138 2492 374 146 1280 Fragments arranged by size: 2492 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2091 2385 2718 3557 4154 4941 5209 Size: 393 459 294 333 839 597 787 268 Cuts at: 5209 1239 Size: 1524 Fragments arranged by size: 1524 839 787 597 459 393 333 294 268 EcoNI CCTnn'n_nnAGG Cuts at: 2587 2587 Size: 5494 EcoO109I rG'GnC_Cy Cuts at: 2230 2241 2296 2326 2497 2230 Size: 11 55 30 171 5227 Fragments arranged by size: 5227 171 55 30 11 EcoRI G'AATT_C Cuts at: 2803 3181 2803 Size: 378 5116 FspI TGC'GCA Cuts at: 4000 4000 Size: 5494 HaeII r_GCGC'y Cuts at: 1678 4641 1678 Size: 2963 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2102 2134 2550 2582 4135 Size: 32 135 32 530 32 416 32 1553 Cuts at: 4135 4167 4209 4241 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1553 530 416 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2740 2838 3084 669 Size: 988 281 802 98 246 3079 Fragments arranged by size: 3079 988 802 281 246 98 HindIII A'AGCT_T Cuts at: 748 748 Size: 5494 HpaI GTT'AAC Cuts at: 3084 3084 Size: 5494 KpnI G_GTAC'C Cuts at: 2819 2819 Size: 5494 MfeI C'AATT_G Cuts at: 3093 3093 Size: 5494 MluI A'CGCG_T Cuts at: 5370 5370 Size: 5494 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4608 4792 1305 Size: 3303 184 2007 Fragments arranged by size: 3303 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3672 Fragments arranged by size: 3672 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2531 2537 3452 3811 3970 518 Size: 648 1365 6 915 359 159 2042 Fragments arranged by size: 2042 1365 915 648 359 159 6 MspA1I CmG'CkG Cuts at: 1606 2139 2438 2467 2910 3587 4735 4980 1606 Size: 533 299 29 443 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 533 443 299 245 29 NaeI GCC'GGC Cuts at: 2197 2269 2197 Size: 72 5422 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4942 NdeI CA'TA_TG Cuts at: 387 387 Size: 5494 NgoMIV G'CCGG_C Cuts at: 2195 2267 2195 Size: 72 5422 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5494 NotI GC'GGCC_GC Cuts at: 2941 2941 Size: 5494 NspI r_CATG'y Cuts at: 1132 1229 2047 2852 4397 1132 Size: 97 818 805 1545 2229 Fragments arranged by size: 2229 1545 818 805 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5494 PciI A'CATG_T Cuts at: 4393 4393 Size: 5494 PflMI CCAn_nnn'nTGG Cuts at: 1108 2453 1108 Size: 1345 4149 PfoI T'CCnGG_A Cuts at: 2352 2352 Size: 5494 PmeI GTTT'AAAC Cuts at: 2798 2798 Size: 5494 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3563 3595 5076 5108 3563 Size: 32 1481 32 3949 Fragments arranged by size: 3949 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2230 2296 2497 2230 Size: 66 201 5227 Fragments arranged by size: 5227 201 66 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5494 PsiI TTA'TAA Cuts at: 3064 3064 Size: 5494 PspOMI G'GGCC_C Cuts at: 2240 2240 Size: 5494 PstI C_TGCA'G Cuts at: 830 2846 830 Size: 2016 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5494 PvuII CAG'CTG Cuts at: 2438 2438 Size: 5494 SalI G'TCGA_C Cuts at: 1936 2836 1936 Size: 900 4594 SbfI CC_TGCA'GG Cuts at: 2846 2846 Size: 5494 ScaI AGT'ACT Cuts at: 3742 5454 3742 Size: 1712 3782 SfcI C'TryA_G Cuts at: 826 1045 2842 3977 4658 4849 826 Size: 219 1797 1135 681 191 1471 Fragments arranged by size: 1797 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5494 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5494 SmaI CCC'GGG Cuts at: 1872 2821 1872 Size: 949 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3598 4499 4761 820 Size: 197 926 1655 901 262 1553 Fragments arranged by size: 1655 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3285 493 Size: 2792 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5494 SphI G_CATG'C Cuts at: 1132 2852 1132 Size: 1720 3774 SspI AAT'ATT Cuts at: 5 52 3418 5 Size: 47 3366 2081 Fragments arranged by size: 3366 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5494 StyI C'CwwG_G Cuts at: 513 1065 2484 2933 513 Size: 552 1419 449 3074 Fragments arranged by size: 3074 1419 552 449 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3521 3538 3691 3876 4321 325 Size: 1255 1941 17 153 185 445 1498 Fragments arranged by size: 1941 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3740 5452 96 Size: 274 80 33 51 1443 1763 1712 138 Fragments arranged by size: 1763 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5454 5486 5454 Size: 32 5462 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5494 XbaI T'CTAG_A Cuts at: 2830 2830 Size: 5494 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5494 XmaI C'CCGG_G Cuts at: 1870 2819 1870 Size: 949 4545 XmnI GAAnn'nnTTC Cuts at: 3623 3623 Size: 5494 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3302 276 Size: 53 83 186 936 1768 2468 Fragments arranged by size: 2468 1768 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstZ17I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PmlI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI