Result of FASTA (omim) for
pFN21AB8956
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8956, 333 aa
1>>>pF1KB8956 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2992+/-0.000308; mu= 14.5369+/- 0.019
mean_var=157.2391+/-32.116, 0's: 0 Z-trim(121.8): 255 B-trim: 1545 in 1/50
Lambda= 0.102281
statistics sampled from 38755 (39031) to 38755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.458), width: 16
Scan time: 6.390
The best scores are: opt bits E(85289)
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 2213 337.7 2e-92
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 390 68.7 1.8e-11
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 384 67.9 3.8e-11
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 367 65.0 1.3e-10
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 367 65.1 1.6e-10
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 368 65.5 1.9e-10
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 364 64.9 2.7e-10
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 316 57.8 3.9e-08
XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 305 55.9 8.4e-08
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 309 56.9 9.1e-08
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 305 56.1 1e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 305 56.2 1.2e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 305 56.2 1.2e-07
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 56.3 1.4e-07
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 305 56.3 1.4e-07
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 56.3 1.4e-07
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 56.3 1.4e-07
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 56.3 1.4e-07
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 305 56.3 1.4e-07
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 305 56.5 1.7e-07
NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 300 55.5 2.1e-07
NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 300 55.5 2.2e-07
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 291 54.0 4.3e-07
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 291 54.0 4.3e-07
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 291 54.3 6.2e-07
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 288 53.7 6.9e-07
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 283 52.9 1e-06
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 280 52.3 1.2e-06
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 271 51.1 3.4e-06
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 269 50.8 4.2e-06
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 271 51.3 4.3e-06
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 266 50.4 5.7e-06
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 263 50.0 9e-06
NP_001073927 (OMIM: 142991) homeobox even-skipped ( 476) 264 50.3 9.7e-06
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 263 50.1 1e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 263 50.1 1e-05
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 261 49.7 1.1e-05
>>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3 (333 aa)
initn: 2213 init1: 2213 opt: 2213 Z-score: 1780.1 bits: 337.7 E(85289): 2e-92
Smith-Waterman score: 2213; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
250 260 270 280 290 300
310 320 330
pF1KB8 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
:::::::::::::::::::::::::::::::::
NP_001 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
310 320 330
>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa)
initn: 347 init1: 282 opt: 390 Z-score: 326.8 bits: 68.7 E(85289): 1.8e-11
Smith-Waterman score: 395; 39.3% identity (60.7% similar) in 247 aa overlap (98-332:37-258)
70 80 90 100 110 120
pF1KB8 DSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRC-ADARGAS--GAGLAGGSLS
: :: . : :. ::. .:: .::. .
NP_001 TSTPFSVKDILRLERERSCPAASPHPRVRKSPENFQYLRMDAEPRGSEVHNAGGGGGDRK
10 20 30 40 50 60
130 140 150 160 170 180
pF1KB8 LGQPVCELAASKDLEEEAAGRSDS--EMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAG
: : : .: .. ::.: :. .: ....: :. . . :.:
NP_001 L-----------DGSEPPGGPCEAVLEMDAERMGEPQPGL--NAASPLGGGTRVPERGVG
70 80 90 100 110
190 200 210 220 230 240
pF1KB8 GGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQVFELERRFNHQRYLSGPERADLAA
..: : .: .:. :: :..:. :. ::.:::. :::::..:::::.::: ::.
NP_001 NSGDSVRGGRSEQ------PKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS
120 130 140 150 160
250 260 270 280 290
pF1KB8 SLKLTETQVKIWFQNRRYKTKRRQMAADL-LASAP-AAKKVAVKVLVRDDQRQYLPGEVL
.:.:: ::::::::::::: ::... .: ::. : . ..::: ::::: . ::
NP_001 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPG---
170 180 190 200 210 220
300 310 320 330
pF1KB8 RPPSLLPLQPSYYY----PYYCLPGWALSTCAAAAGTQ
: . : :: : :: : :.. . .:. ::
NP_001 -PGA--PAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHG
230 240 250 260 270 280
NP_001 GQNATPQGHLAATLQGVRAW
290 300
>>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa)
initn: 295 init1: 295 opt: 384 Z-score: 321.1 bits: 67.9 E(85289): 3.8e-11
Smith-Waterman score: 384; 49.0% identity (68.7% similar) in 147 aa overlap (190-330:131-274)
160 170 180 190 200 210
pF1KB8 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV
:: . :: ::::..:. :. ::.:::
NP_660 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB8 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA----
:::::::..:::::.::: ::.::::: ::::::::::::: ::... .: .:
NP_660 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP
170 180 190 200 210 220
280 290 300 310 320 330
pF1KB8 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
: ..::: ::::: . :. .. : . . : : .:... .. ::::
NP_660 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAAAAAA
230 240 250 260 270
NP_660 AAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSG
280 290 300 310 320 330
>>NP_001243268 (OMIM: 602041) homeobox protein Nkx-3.1 i (159 aa)
initn: 440 init1: 355 opt: 367 Z-score: 311.7 bits: 65.0 E(85289): 1.3e-10
Smith-Waterman score: 392; 53.2% identity (72.2% similar) in 126 aa overlap (199-322:42-155)
170 180 190 200 210 220
pF1KB8 PRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQ
: .:: .:::::::::.::.::::.:.::
NP_001 AETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQ
20 30 40 50 60 70
230 240 250 260 270 280
pF1KB8 RYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRD
.:::.:::: :: .:::::::::::::::::::::.:....: : .
NP_001 KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGD------------LEKH
80 90 100 110
290 300 310 320 330
pF1KB8 DQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWALSTCAAAAGTQ
.. : :.. ::. . :: :::: ::. .:.
NP_001 SSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
120 130 140 150
>>NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 isof (234 aa)
initn: 480 init1: 355 opt: 367 Z-score: 309.8 bits: 65.1 E(85289): 1.6e-10
Smith-Waterman score: 396; 39.6% identity (62.3% similar) in 212 aa overlap (136-322:32-230)
110 120 130 140 150 160
pF1KB8 RCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD
.:. ...: :. .. :.. . : :. : .
NP_006 LRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPE
10 20 30 40 50 60
170 180 190 200
pF1KB8 GVGPR---GAHVSALCSGAGGGGGSGPAGVAEEEEE--------------------PAAP
: : ::. . : .: .. . . .:: : : : .:
NP_006 PEGGRSRAGAQNDQLSTGPRAAPEEAET-LAETEPERHLGSYLLDSENTSGALPRLPQTP
70 80 90 100 110 120
210 220 230 240 250 260
pF1KB8 KPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTK
: .:::::::::.::.::::.:.::.:::.:::: :: .::::::::::::::::::::
NP_006 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
130 140 150 160 170 180
270 280 290 300 310 320
pF1KB8 RRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPG
:.:....: . :. .. .: . :.. ::. . :: :::: ::. .
NP_006 RKQLSSEL---GDLEKHSSLPALKE---------EAFSRASLVSVYNSYPYYPYLYCVGS
190 200 210 220
330
pF1KB8 WALSTCAAAAGTQ
:.
NP_006 WSPAFW
230
>>NP_001099044 (OMIM: 613380) homeobox protein HMX3 [Hom (357 aa)
initn: 375 init1: 271 opt: 368 Z-score: 308.4 bits: 65.5 E(85289): 1.9e-10
Smith-Waterman score: 368; 33.0% identity (55.5% similar) in 330 aa overlap (10-319:29-346)
10 20 30
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAP-----
. :::. .:: ..: :. .: :
NP_001 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHR---PPPKPQPPPRTLFA
10 20 30 40 50
40 50 60 70 80
pF1KB8 GGTAASVAAAPAVCCWRLFGERDAG-ALGGAEDSLLASP----AGTRTA--AGRTAESPE
..::..::: :. . : :: ::. . : :: : . : : : .::
NP_001 PASAAAAAAAAAAAAAKGALEGAAGFALSQVGD--LAFPRFEIPAQRFALPAHYLERSPA
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB8 GWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSE
: . .. : :. .. . ... . .: : :. : ..: ..: .:
NP_001 WWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD-HKELDSKSPDE
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 MSASVSGDRSPRTEDDGV-GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR
. : .. . : ... : :: :.: ..: :. . :. :..:: :::.
NP_001 IILEESDSEESKKEGEAAPGAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKK
180 190 200 210 220
210 220 230 240 250 260
pF1KB8 SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAA
.:..::..:::.:: :. .::::. ::: :::::.:::::::::::::: : :: :.::
NP_001 TRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR-QLAA
230 240 250 260 270 280
270 280 290 300 310 320
pF1KB8 DL----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYP---YYCLPGW
.: :. : : . : : .: .... . . . :: .: :: :
NP_001 ELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVV
290 300 310 320 330 340
330
pF1KB8 ALSTCAAAAGTQ
NP_001 SSVPLLRPV
350
>>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa)
initn: 364 init1: 265 opt: 364 Z-score: 305.7 bits: 64.9 E(85289): 2.7e-10
Smith-Waterman score: 364; 46.9% identity (65.7% similar) in 143 aa overlap (194-327:123-265)
170 180 190 200 210 220
pF1KB8 DDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAA---FSHAQVFE
:. : : .:: .: : ::.:::.:
NP_004 YPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE
100 110 120 130 140 150
230 240 250 260 270
pF1KB8 LERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR-RQ-MAADLLA----SA
:::::..:::::.::: .::. :::: ::::::::::::: :: :: .. .:..
NP_004 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPP
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 PAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
: :...:: ::::: . . : . :.: : : ::.. ..:.
NP_004 PPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTA
220 230 240 250 260 270
NP_004 AYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
280 290 300 310 320
>>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa)
initn: 307 init1: 270 opt: 316 Z-score: 267.1 bits: 57.8 E(85289): 3.9e-08
Smith-Waterman score: 367; 35.9% identity (56.8% similar) in 287 aa overlap (76-322:40-321)
50 60 70 80 90 100
pF1KB8 APAVCCWRLFGERDAGALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRR
:.: . ..:: :...: .. . ::
NP_061 RATPARASSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRR
10 20 30 40 50 60
110 120 130 140 150
pF1KB8 RCADARGASG-----AGLAGGSLSLGQ-------PVCELA--ASKDLEEEAAGRSDSEMS
. . : .: : :. :.:.:: : :. .. .: : . .:
NP_061 QLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLS
70 80 90 100 110 120
160 170 180 190 200
pF1KB8 ASVSGDRSPRTEDD-----GVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEE----PAAP
..: ::.: .. :. ::: .:. :. .. :::. .:: : :::
NP_061 PDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAA
130 140 150 160 170 180
210 220 230 240 250
pF1KB8 KP----------RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKI
:::..:..::..:::.:: :. .::::. ::: :::::.::::::::
NP_061 GETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKI
190 200 210 220 230 240
260 270 280 290 300
pF1KB8 WFQNRRYKTKRRQMAADLLA---SAPAAKK-VAVKVLVRDDQRQYLPGEVLR-PPSLLP-
:::::: : :: :.::.: : : :.:.. : : :: ... :. . ::. ::
NP_061 WFQNRRNKWKR-QLAAELEAASLSPPGAQRLVRVPVLYHESP----PAAAAAGPPATLPF
250 260 270 280 290 300
310 320 330
pF1KB8 -LQPSYYYPYYCLPGWALSTCAAAAGTQ
: :. : : :..
NP_061 PLAPAAPAPPPPLLGFSGALAYPLAAFPAAASVPFLRAQMPGLV
310 320 330 340
>>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei (202 aa)
initn: 335 init1: 260 opt: 305 Z-score: 261.1 bits: 55.9 E(85289): 8.4e-08
Smith-Waterman score: 305; 54.0% identity (78.2% similar) in 87 aa overlap (205-290:56-142)
180 190 200 210 220 230
pF1KB8 SALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGP
.:.. :. ::.::..:::::: .:::::.:
XP_006 QDSSSKSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAP
30 40 50 60 70 80
240 250 260 270 280 290
pF1KB8 ERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA-PAAKKVAVKVLVRDDQRQY
:: ::. ..:: :::::::::.::: :: . . .. :. ..::: ::::: .
XP_006 EREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSPRRVAVPVLVRDGKPCH
90 100 110 120 130 140
300 310 320 330
pF1KB8 LPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
XP_006 ALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQQWTW
150 160 170 180 190 200
>>XP_011523023 (OMIM: 142966) PREDICTED: homeobox protei (430 aa)
initn: 318 init1: 257 opt: 309 Z-score: 260.5 bits: 56.9 E(85289): 9.1e-08
Smith-Waterman score: 309; 35.3% identity (64.7% similar) in 167 aa overlap (108-274:95-255)
80 90 100 110 120 130
pF1KB8 RTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKD
: . ..:... .:: . : : : ....
XP_011 KSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNST
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB8 LEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEE
: .. ..: . :: :: : : :. .. .:.:::::.: .: ..
XP_011 LTKQIFPWMKESRQTSKLKNNSPGTEGCG-GGGGGGGGGGSGGSGGGGGGGGGG---DKS
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB8 EPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNR
:.. .::.:.:.. ::. :::..:. .::: :.:...: :.:.: :.:::::::
XP_011 PPGSAA--SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNR
190 200 210 220 230
260 270 280 290 300 310
pF1KB8 RYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYC
:.: :. : : : .:.
XP_011 RMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQ
240 250 260 270 280 290
333 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:48:30 2016 done: Sat Nov 5 00:48:32 2016
Total Scan time: 6.390 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]