FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5128, 128 aa 1>>>pF1KE5128 128 - 128 aa - 128 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1240+/-0.000327; mu= 11.6158+/- 0.020 mean_var=56.0987+/-11.242, 0's: 0 Z-trim(114.8): 40 B-trim: 0 in 0/52 Lambda= 0.171237 statistics sampled from 24838 (24874) to 24838 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.292), width: 16 Scan time: 3.850 The best scores are: opt bits E(85289) NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128) 821 210.4 6.3e-55 NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128) 821 210.4 6.3e-55 NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153) 312 84.7 5.3e-17 NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266) 155 46.0 4.1e-05 NP_001030005 (OMIM: 224230,606470,613987) H/ACA ri ( 90) 124 38.2 0.0032 >>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo (128 aa) initn: 821 init1: 821 opt: 821 Z-score: 1107.0 bits: 210.4 E(85289): 6.3e-55 Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 70 80 90 100 110 120 pF1KE5 QSIERLLV :::::::: NP_001 QSIERLLV >>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap (128 aa) initn: 821 init1: 821 opt: 821 Z-score: 1107.0 bits: 210.4 E(85289): 6.3e-55 Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 70 80 90 100 110 120 pF1KE5 QSIERLLV :::::::: NP_004 QSIERLLV >>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle (153 aa) initn: 297 init1: 297 opt: 312 Z-score: 426.2 bits: 84.7 E(85289): 5.3e-17 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (7-126:32-149) 10 20 30 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR :: : :::. .::.:: .... . ::.: NP_060 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . NP_060 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK 70 80 90 100 110 120 100 110 120 pF1KE5 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV ::. : . .: . .. . . .. : NP_060 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL 130 140 150 >>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho (266 aa) initn: 132 init1: 132 opt: 155 Z-score: 212.8 bits: 46.0 E(85289): 4.1e-05 Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (35-91:136-192) 10 20 30 40 50 60 pF1KE5 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE :: :.: .: .. ....:.: :..:.: NP_000 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE 110 120 130 140 150 160 70 80 90 100 110 120 pF1KE5 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE ... :: ::. .::: ....: ::: NP_000 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN 170 180 190 200 210 220 >>NP_001030005 (OMIM: 224230,606470,613987) H/ACA ribonu (90 aa) initn: 124 init1: 124 opt: 124 Z-score: 178.9 bits: 38.2 E(85289): 0.0032 Smith-Waterman score: 124; 41.9% identity (76.7% similar) in 43 aa overlap (7-49:32-74) 10 20 30 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR :: : :::. .::.:: .... . ::.: NP_001 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS .:..:. : .:.: NP_001 RGVKEVQKFVNKGEKGTWVQPQAPSAPPV 70 80 90 128 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:39:24 2016 done: Mon Nov 7 21:39:25 2016 Total Scan time: 3.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]