FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5128, 128 aa 1>>>pF1KE5128 128 - 128 aa - 128 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4097+/-0.000717; mu= 9.6030+/- 0.043 mean_var=53.2279+/-10.566, 0's: 0 Z-trim(107.8): 15 B-trim: 365 in 1/49 Lambda= 0.175794 statistics sampled from 9809 (9821) to 9809 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.302), width: 16 Scan time: 1.230 The best scores are: opt bits E(32554) CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22 ( 128) 821 215.7 6.3e-57 CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22 ( 128) 821 215.7 6.3e-57 CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5 ( 153) 312 86.6 5.4e-18 >>CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22 (128 aa) initn: 821 init1: 821 opt: 821 Z-score: 1135.5 bits: 215.7 E(32554): 6.3e-57 Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 70 80 90 100 110 120 pF1KE5 QSIERLLV :::::::: CCDS14 QSIERLLV >>CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22 (128 aa) initn: 821 init1: 821 opt: 821 Z-score: 1135.5 bits: 215.7 E(32554): 6.3e-57 Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 70 80 90 100 110 120 pF1KE5 QSIERLLV :::::::: CCDS33 QSIERLLV >>CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5 (153 aa) initn: 297 init1: 297 opt: 312 Z-score: 436.5 bits: 86.6 E(32554): 5.4e-18 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (7-126:32-149) 10 20 30 pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR :: : :::. .::.:: .... . ::.: CCDS44 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . CCDS44 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK 70 80 90 100 110 120 100 110 120 pF1KE5 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV ::. : . .: . .. . . .. : CCDS44 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL 130 140 150 128 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:39:23 2016 done: Mon Nov 7 21:39:24 2016 Total Scan time: 1.230 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]