Result of FASTA (omim) for
pFN21AB6434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6434, 344 aa
1>>>pF1KB6434 344 - 344 aa - 344 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2311+/-0.000358; mu= 16.4348+/- 0.022
mean_var=65.7030+/-13.416, 0's: 0 Z-trim(112.8): 17 B-trim: 0 in 0/54
Lambda= 0.158227
statistics sampled from 21790 (21800) to 21790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.256), width: 16
Scan time: 7.990
The best scores are: opt bits E(85289)
NP_060037 (OMIM: 606828) N-acetyl-D-glucosamine ki ( 390) 2311 536.5 3.6e-152
NP_001317355 (OMIM: 606828) N-acetyl-D-glucosamine ( 293) 1979 460.6 1.9e-129
XP_005264472 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
XP_011531259 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
NP_001317354 (OMIM: 606828) N-acetyl-D-glucosamine ( 293) 1979 460.6 1.9e-129
XP_005264470 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
XP_016859929 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 263) 1299 305.4 9e-83
>>NP_060037 (OMIM: 606828) N-acetyl-D-glucosamine kinase (390 aa)
initn: 2311 init1: 2311 opt: 2311 Z-score: 2852.9 bits: 536.5 E(85289): 3.6e-152
Smith-Waterman score: 2311; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:47-390)
10 20 30
pF1KB6 MAAIYGGVEGGGTRSEVLLVSEDGKILAEA
::::::::::::::::::::::::::::::
NP_060 SGAVPRQLEGRRCQAGRDANGGTSSDGSSSMAAIYGGVEGGGTRSEVLLVSEDGKILAEA
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB6 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB6 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB6 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
320 330 340 350 360 370
340
pF1KB6 YSANAIAFYSYTFS
::::::::::::::
NP_060 YSANAIAFYSYTFS
380 390
>>NP_001317355 (OMIM: 606828) N-acetyl-D-glucosamine kin (293 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2445.2 bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)
30 40 50 60 70 80
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
::::::::::::::::::::::::::::::
NP_001 MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
10 20 30
90 100 110 120 130 140
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
220 230 240 250 260 270
330 340
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
:::::::::::::::::::::::
NP_001 HIGHLLPMDYSANAIAFYSYTFS
280 290
>>XP_005264472 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc (293 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2445.2 bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)
30 40 50 60 70 80
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
::::::::::::::::::::::::::::::
XP_005 MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
10 20 30
90 100 110 120 130 140
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
220 230 240 250 260 270
330 340
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
:::::::::::::::::::::::
XP_005 HIGHLLPMDYSANAIAFYSYTFS
280 290
>>XP_011531259 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc (293 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2445.2 bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)
30 40 50 60 70 80
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
::::::::::::::::::::::::::::::
XP_011 MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
10 20 30
90 100 110 120 130 140
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
220 230 240 250 260 270
330 340
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
:::::::::::::::::::::::
XP_011 HIGHLLPMDYSANAIAFYSYTFS
280 290
>>NP_001317354 (OMIM: 606828) N-acetyl-D-glucosamine kin (293 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2445.2 bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)
30 40 50 60 70 80
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
::::::::::::::::::::::::::::::
NP_001 MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
10 20 30
90 100 110 120 130 140
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
220 230 240 250 260 270
330 340
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
:::::::::::::::::::::::
NP_001 HIGHLLPMDYSANAIAFYSYTFS
280 290
>>XP_005264470 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc (293 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2445.2 bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)
30 40 50 60 70 80
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
::::::::::::::::::::::::::::::
XP_005 MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
10 20 30
90 100 110 120 130 140
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
220 230 240 250 260 270
330 340
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
:::::::::::::::::::::::
XP_005 HIGHLLPMDYSANAIAFYSYTFS
280 290
>>XP_016859929 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc (263 aa)
initn: 1319 init1: 1299 opt: 1299 Z-score: 1607.0 bits: 305.4 E(85289): 9e-83
Smith-Waterman score: 1299; 99.0% identity (99.5% similar) in 197 aa overlap (1-197:47-243)
10 20 30
pF1KB6 MAAIYGGVEGGGTRSEVLLVSEDGKILAEA
::::::::::::::::::::::::::::::
XP_016 SGAVPRQLEGRRCQAGRDANGGTSSDGSSSMAAIYGGVEGGGTRSEVLLVSEDGKILAEA
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB6 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
:::::::::::::::::::::::::::::::::::::::::::: .:
XP_016 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVLSRETPFPAISSGRLG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB6 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
XP_016 RCWADTS
260
344 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:58:52 2016 done: Fri Nov 4 22:58:53 2016
Total Scan time: 7.990 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]