(Circular) (Six-base) MAPSORT of: pFN21AE0473.seq Check: 5296 from: 1 to: 5296 pFN21AE0473 5296 bp With 182 enzymes: SgfI * October 20, 2009 10:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3106 278 Size: 53 83 186 936 1570 2468 Fragments arranged by size: 2468 1570 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2639 1937 Size: 702 4594 Acc65I G'GTAC_C Cuts at: 2617 2617 Size: 5296 AclI AA'CG_TT Cuts at: 1563 3423 3796 1563 Size: 1860 373 3063 Fragments arranged by size: 3063 1860 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2334 2532 3359 4743 5011 1632 Size: 702 198 827 1384 268 1917 Fragments arranged by size: 1917 1384 827 702 268 198 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5099 AflIII A'CryG_T Cuts at: 1203 4195 5172 1203 Size: 2992 977 1327 Fragments arranged by size: 2992 1327 977 AgeI A'CCGG_T Cuts at: 4127 4127 Size: 5296 AhdI GACnn_n'nnGTC Cuts at: 4025 4025 Size: 5296 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5296 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2496 2559 1184 Size: 1312 63 3921 Fragments arranged by size: 3921 1312 63 AlwNI CAG_nnn'CTG Cuts at: 2072 2084 2096 3039 4611 2072 Size: 12 12 943 1572 2757 Fragments arranged by size: 2757 1572 943 12 12 ApaI G_GGCC'C Cuts at: 2257 2257 Size: 5296 ApaLI G'TGCA_C Cuts at: 3353 4509 3353 Size: 1156 4140 ApoI r'AATT_y Cuts at: 1493 2605 2831 2983 5092 1493 Size: 1112 226 152 2109 1697 Fragments arranged by size: 2109 1697 1112 226 152 AseI AT'TA_AT Cuts at: 160 1032 3850 160 Size: 872 2818 1606 Fragments arranged by size: 2818 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5296 AvaI C'yCGr_G Cuts at: 1870 1943 2621 1870 Size: 73 678 4545 Fragments arranged by size: 4545 678 73 BamHI G'GATC_C Cuts at: 2626 2993 2626 Size: 367 4929 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2393 2617 4072 618 Size: 325 217 627 606 224 1455 1842 Fragments arranged by size: 1842 1455 627 606 325 224 217 BanII G_rGCy'C Cuts at: 1391 2257 2615 1391 Size: 866 358 4072 Fragments arranged by size: 4072 866 358 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4325 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3487 3521 1903 Size: 34 1550 34 3678 Fragments arranged by size: 3678 1550 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3188 4398 3188 Size: 1210 4086 BclI T'GATC_A Cuts at: 1548 1548 Size: 5296 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3907 136 Size: 107 122 71 631 605 2235 1525 Fragments arranged by size: 2235 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5291 5291 Size: 5296 BlpI GC'TnA_GC Cuts at: 2463 2713 2463 Size: 250 5046 Bme1580I G_kGCm'C Cuts at: 1790 2257 2396 3357 4513 1790 Size: 467 139 961 1156 2573 Fragments arranged by size: 2573 1156 961 467 139 BmgBI CAC'GTC Cuts at: 1318 2476 1318 Size: 1158 4138 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3027 3985 442 Size: 416 53 83 399 24 1610 958 1753 Fragments arranged by size: 1753 1610 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5296 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2037 2043 2049 2229 3956 1239 Size: 798 6 6 180 1727 2579 Fragments arranged by size: 2579 1727 798 180 6 6 Bpu10I CC'TnA_GC Cuts at: 2022 2022 Size: 5296 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3421 4286 4584 3421 Size: 865 298 4133 Fragments arranged by size: 4133 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3959 882 Size: 617 2460 2219 Fragments arranged by size: 2460 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3087 493 Size: 711 1883 2702 Fragments arranged by size: 2702 1883 711 BsaBI GATnn'nnATC Cuts at: 2219 5290 2219 Size: 3071 2225 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3103 3485 4120 275 Size: 53 83 186 936 1570 382 635 1451 Fragments arranged by size: 1570 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2196 3729 4127 4401 4548 4959 2196 Size: 1533 398 274 147 411 2533 Fragments arranged by size: 2533 1533 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2510 2540 1178 Size: 30 165 30 1107 30 3934 Fragments arranged by size: 3934 1107 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5296 BseYI C'CCAG_C Cuts at: 2089 2296 2531 4499 4995 2089 Size: 207 235 1968 496 2390 Fragments arranged by size: 2390 1968 496 235 207 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2058 1163 Size: 573 322 4401 Fragments arranged by size: 4401 573 322 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2746 3507 4535 1540 Size: 275 186 745 761 1028 2301 Fragments arranged by size: 2301 1028 761 745 275 186 BsiHKAI G_wGCw'C Cuts at: 3357 3442 4513 3357 Size: 85 1071 4140 Fragments arranged by size: 4140 1071 85 BsmI GAATG_Cn' Cuts at: 2807 2900 2807 Size: 93 5203 BsmBI CGTCTCn'nnnn_ Cuts at: 2339 2339 Size: 5296 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2257 2396 2615 3357 3442 4513 1391 Size: 399 467 139 219 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 467 399 219 139 85 BspEI T'CCGG_A Cuts at: 4959 4959 Size: 5296 BspHI T'CATG_A Cuts at: 3185 4915 3185 Size: 1730 3566 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2122 2651 844 Size: 1278 529 3489 Fragments arranged by size: 3489 1278 529 BsrBI CCG'CTC Cuts at: 1394 1823 3183 1394 Size: 429 1360 3507 Fragments arranged by size: 3507 1360 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2449 3791 3965 65 Size: 1183 1201 1342 174 1396 Fragments arranged by size: 1396 1342 1201 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3940 4127 1700 Size: 110 2130 187 2869 Fragments arranged by size: 2869 2130 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5296 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5296 BssSI C'ACGA_G Cuts at: 3356 4368 3356 Size: 1012 4284 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5296 BstBI TT'CG_AA Cuts at: 4100 4100 Size: 5296 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5296 BstYI r'GATC_y Cuts at: 1972 2626 2993 3378 3395 4847 4933 4945 5291 Size: 654 367 385 17 1452 86 12 346 Cuts at: 5291 1972 Size: 1977 Fragments arranged by size: 1977 1452 654 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2097 2097 Size: 5296 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3805 Fragments arranged by size: 3805 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4557 Fragments arranged by size: 4557 683 56 BtsI GCAGTG_nn' Cuts at: 2148 2812 3606 3626 2148 Size: 664 794 20 3818 Fragments arranged by size: 3818 794 664 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5296 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5261 DraI TTT'AAA Cuts at: 2600 2600 Size: 5296 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4303 809 Size: 507 2987 1802 Fragments arranged by size: 2987 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2230 2743 3632 Size: 54 1425 50 275 18 400 513 889 Cuts at: 3632 5261 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 513 400 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2743 1537 Size: 275 931 4090 Fragments arranged by size: 4090 931 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2160 2310 3226 1353 Size: 807 150 916 3423 Fragments arranged by size: 3423 916 807 150 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3883 4257 4403 387 Size: 1064 138 2294 374 146 1280 Fragments arranged by size: 2294 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2037 2043 2049 2229 2334 2532 3359 Size: 393 405 6 6 180 105 198 827 Cuts at: 3359 3956 4743 5011 1239 Size: 597 787 268 1524 Fragments arranged by size: 1524 827 787 597 405 393 268 198 180 105 6 6 EcoO109I rG'GnC_Cy Cuts at: 2254 2416 2254 Size: 162 5134 EcoRI G'AATT_C Cuts at: 2605 2983 2605 Size: 378 4918 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2161 2161 Size: 5296 FspI TGC'GCA Cuts at: 3802 3802 Size: 5296 HaeII r_GCGC'y Cuts at: 1678 4443 1678 Size: 2765 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3937 3969 4011 4043 1373 Size: 32 135 32 2365 32 42 32 2626 Fragments arranged by size: 2626 2365 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2640 2886 669 Size: 988 281 702 246 3079 Fragments arranged by size: 3079 988 702 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5296 HpaI GTT'AAC Cuts at: 2886 2886 Size: 5296 KpnI G_GTAC'C Cuts at: 2621 2621 Size: 5296 MfeI C'AATT_G Cuts at: 2895 2895 Size: 5296 MluI A'CGCG_T Cuts at: 5172 5172 Size: 5296 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4410 4594 1305 Size: 3105 184 2007 Fragments arranged by size: 3105 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3474 Fragments arranged by size: 3474 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2453 3254 3613 3772 518 Size: 648 1287 801 359 159 2042 Fragments arranged by size: 2042 1287 801 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2524 2712 3389 4537 4782 1606 Size: 918 188 677 1148 245 2120 Fragments arranged by size: 2120 1148 918 677 245 188 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3805 Fragments arranged by size: 3805 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5296 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5296 NotI GC'GGCC_GC Cuts at: 2743 2743 Size: 5296 NspI r_CATG'y Cuts at: 1132 1229 2654 4199 1132 Size: 97 1425 1545 2229 Fragments arranged by size: 2229 1545 1425 97 PasI CC'CwG_GG Cuts at: 1348 2257 2488 1348 Size: 909 231 4156 Fragments arranged by size: 4156 909 231 PciI A'CATG_T Cuts at: 4195 4195 Size: 5296 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5296 PmeI GTTT'AAAC Cuts at: 2600 2600 Size: 5296 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3365 3397 4878 4910 3365 Size: 32 1481 32 3751 Fragments arranged by size: 3751 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5296 PsiI TTA'TAA Cuts at: 2866 2866 Size: 5296 PspOMI G'GGCC_C Cuts at: 2253 2253 Size: 5296 PstI C_TGCA'G Cuts at: 830 2367 2648 830 Size: 1537 281 3478 Fragments arranged by size: 3478 1537 281 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5296 PvuII CAG'CTG Cuts at: 2524 2524 Size: 5296 SalI G'TCGA_C Cuts at: 1936 2638 1936 Size: 702 4594 SbfI CC_TGCA'GG Cuts at: 2648 2648 Size: 5296 ScaI AGT'ACT Cuts at: 3544 5256 3544 Size: 1712 3584 SfcI C'TryA_G Cuts at: 826 1045 2363 2644 3779 4460 4651 826 Size: 219 1318 281 1135 681 191 1471 Fragments arranged by size: 1471 1318 1135 681 281 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5296 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5296 SmaI CCC'GGG Cuts at: 1872 2623 1872 Size: 751 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3400 4301 4563 820 Size: 197 926 1457 901 262 1553 Fragments arranged by size: 1553 1457 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3087 493 Size: 2594 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5296 SphI G_CATG'C Cuts at: 1132 2654 1132 Size: 1522 3774 SspI AAT'ATT Cuts at: 5 52 3220 5 Size: 47 3168 2081 Fragments arranged by size: 3168 2081 47 StuI AGG'CCT Cuts at: 1517 2180 1517 Size: 663 4633 StyI C'CwwG_G Cuts at: 513 1065 2004 2106 2735 513 Size: 552 939 102 629 3074 Fragments arranged by size: 3074 939 629 552 102 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2447 3323 3340 3493 3678 4123 325 Size: 1255 867 876 17 153 185 445 1498 Fragments arranged by size: 1498 1255 876 867 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2245 3542 5254 Size: 274 80 33 51 1443 268 1297 1712 Cuts at: 5254 96 Size: 138 Fragments arranged by size: 1712 1443 1297 274 268 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5256 5288 5256 Size: 32 5264 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5296 XbaI T'CTAG_A Cuts at: 2632 2632 Size: 5296 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5296 XmaI C'CCGG_G Cuts at: 1870 2621 1870 Size: 751 4545 XmnI GAAnn'nnTTC Cuts at: 3425 3425 Size: 5296 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3104 276 Size: 53 83 186 936 1570 2468 Fragments arranged by size: 2468 1570 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BstXI BstZ17I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI