FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6843, 175 aa
  1>>>pF1KB6843 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1981+/-0.000281; mu= 13.0912+/- 0.018
 mean_var=60.7911+/-12.077, 0's: 0 Z-trim(118.3): 1  B-trim: 0 in 0/52
 Lambda= 0.164496
 statistics sampled from 31149 (31150) to 31149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.365), width:  16
 Scan time:  4.990

The best scores are:                                      opt bits E(85289)
NP_071344 (OMIM: 611830) 39S ribosomal protein L17 ( 175) 1170 285.4 3.2e-77


>>NP_071344 (OMIM: 611830) 39S ribosomal protein L17, mi  (175 aa)
 initn: 1170 init1: 1170 opt: 1170  Z-score: 1507.2  bits: 285.4 E(85289): 3.2e-77
Smith-Waterman score: 1170; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB6 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB6 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI
              130       140       150       160       170     




175 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:22:43 2016 done: Sat Nov  5 00:22:43 2016
 Total Scan time:  4.990 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]