FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0466, 335 aa 1>>>pF1KE0466 335 - 335 aa - 335 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3568+/-0.000778; mu= 15.4180+/- 0.047 mean_var=63.9948+/-12.693, 0's: 0 Z-trim(107.4): 17 B-trim: 0 in 0/54 Lambda= 0.160325 statistics sampled from 9537 (9544) to 9537 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.293), width: 16 Scan time: 2.660 The best scores are: opt bits E(32554) CCDS1525.1 MARC2 gene_id:54996|Hs108|chr1 ( 335) 2276 535.0 3.1e-152 CCDS81425.1 MARC2 gene_id:54996|Hs108|chr1 ( 257) 1701 402.0 2.7e-112 CCDS1526.1 MARC1 gene_id:64757|Hs108|chr1 ( 337) 1530 362.5 2.8e-100 >>CCDS1525.1 MARC2 gene_id:54996|Hs108|chr1 (335 aa) initn: 2276 init1: 2276 opt: 2276 Z-score: 2846.5 bits: 535.0 E(32554): 3.1e-152 Smith-Waterman score: 2276; 99.7% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRLV ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: CCDS15 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD 250 260 270 280 290 300 310 320 330 pF1KE0 PSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV ::::::::::::::::::::::::::::::::::: CCDS15 PSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV 310 320 330 >>CCDS81425.1 MARC2 gene_id:54996|Hs108|chr1 (257 aa) initn: 1701 init1: 1701 opt: 1701 Z-score: 2129.5 bits: 402.0 E(32554): 2.7e-112 Smith-Waterman score: 1701; 99.6% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRLQQVGTVAKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 WIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYEN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRLV ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: CCDS81 NCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFTNFLKTEAYRLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 QFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 VVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLCD :::::::::: CCDS81 VVTGCDAFEEASATRRD 250 >>CCDS1526.1 MARC1 gene_id:64757|Hs108|chr1 (337 aa) initn: 1322 init1: 1322 opt: 1530 Z-score: 1913.9 bits: 362.5 E(32554): 2.8e-100 Smith-Waterman score: 1530; 65.8% identity (86.5% similar) in 333 aa overlap (1-332:1-333) 10 20 30 40 50 pF1KE0 MGASSSSALARLGLPARPWPRWLGVAALGLAAVALGTVAWRRAWPRRRRRL-QQVGTVAK :::..::::::. : :. : :::::::::.:::::.:::::::: ::::: :::::::. CCDS15 MGAAGSSALARFVLLAQSRPGWLGVAALGLTAVALGAVAWRRAWPTRRRRLLQQVGTVAQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE0 LWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVIKEDGHMVTARQEPRLVLISIIYE :::::::::::::::::::::::::::::::::::::...:.::::::::::::::. . CCDS15 LWIYPVKSCKGVPVSEAECTAMGLRSGNLRDRFWLVINQEGNMVTARQEPRLVLISLTCD 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE0 NNCLIFRAPDMDQLVLPSKQPSSNKLHNCRIFGLDIKGRDCGNEAAKWFANFLKTEAYRL .. : . : .:.:: : :..: .:.::. ::.:.:::::. .:.:...:::.. ::: CCDS15 GDTLTLSAAYTKDLLLPIKTPTTNAVHKCRVHGLEIEGRDCGEATAQWITSFLKSQPYRL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE0 VQFETNMKGRTSRKLLPTLDQNFQVAYPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPN :.:: .:. : ... . . :.:: : :.::...:::.:::.:.:::.: ::::: CCDS15 VHFEPHMRPRRPHQIADLFRPKDQIAYSDTSPFLILSEASLADLNSRLEKKVKATNFRPN 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE0 IVVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVIDRKQPLDTLKSYRLC ::..:::.. ::.:::::::.::.:.:::: :::::::::::::..::.::.:::::: : CCDS15 IVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYRQC 250 260 270 280 290 300 300 310 320 330 pF1KE0 DPSERELYKLSPLFGIYYSVEKIGSLRVGDPVYRMV :::::.:: ::::: :. .:. :...:::::: CCDS15 DPSERKLYGKSPLFGQYFVLENPGTIKVGDPVYLLGQ 310 320 330 335 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:45:05 2016 done: Mon Nov 7 03:45:06 2016 Total Scan time: 2.660 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]