(Linear) (Six-base) MAPSORT of: KIAA1461.seq Check: 6313 from: 1 to: 4482 KIAA1461.orf With 182 enzymes: SgfI * February 17, 2010 09:38 .. AccI GT'mk_AC Cuts at: 0 590 4482 Size: 590 3892 Acc65I G'GTAC_C Cuts at: 0 1164 2963 4482 Size: 1164 1799 1519 Fragments arranged by size: 1799 1519 1164 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 812 1021 1862 2230 2531 2816 4040 4482 Size: 812 209 841 368 301 285 1224 442 Fragments arranged by size: 1224 841 812 442 368 301 285 209 AhdI GACnn_n'nnGTC Cuts at: 0 4401 4482 Size: 4401 81 AleI CACnn'nnGTG Cuts at: 0 2464 4482 Size: 2464 2018 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1727 3086 3313 4482 Size: 1727 1359 227 1169 Fragments arranged by size: 1727 1359 1169 227 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 4087 4119 4482 Size: 4087 32 363 Fragments arranged by size: 4087 363 32 AlwNI CAG_nnn'CTG Cuts at: 0 2904 4482 Size: 2904 1578 ApaLI G'TGCA_C Cuts at: 0 1327 2275 3860 4482 Size: 1327 948 1585 622 Fragments arranged by size: 1585 1327 948 622 ApoI r'AATT_y Cuts at: 0 471 1410 2412 2444 3477 3640 3773 3786 Size: 471 939 1002 32 1033 163 133 13 Cuts at: 3786 3978 4482 Size: 192 504 Fragments arranged by size: 1033 1002 939 504 471 192 163 133 32 13 AseI AT'TA_AT Cuts at: 0 1127 1573 4482 Size: 1127 446 2909 Fragments arranged by size: 2909 1127 446 AvaI C'yCGr_G Cuts at: 0 419 2160 4249 4270 4482 Size: 419 1741 2089 21 212 Fragments arranged by size: 2089 1741 419 212 21 BanI G'GyrC_C Cuts at: 0 1164 2554 2963 4482 Size: 1164 1390 409 1519 Fragments arranged by size: 1519 1390 1164 409 BanII G_rGCy'C Cuts at: 0 780 3113 3492 4271 4482 Size: 780 2333 379 779 211 Fragments arranged by size: 2333 780 779 379 211 BbsI GAAGACnn'nnnn_ Cuts at: 0 37 4223 4288 4482 Size: 37 4186 65 194 Fragments arranged by size: 4186 194 65 37 BbvCI CC'TCA_GC Cuts at: 0 3472 4482 Size: 3472 1010 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1900 1934 4482 Size: 1900 34 2548 Fragments arranged by size: 2548 1900 34 BclI T'GATC_A Cuts at: 0 3456 4482 Size: 3456 1026 BfrBI ATG'CAT Cuts at: 0 299 4482 Size: 299 4183 BglI GCCn_nnn'nGGC Cuts at: 0 656 4482 Size: 656 3826 BglII A'GATC_T Cuts at: 0 1691 4472 4482 Size: 1691 2781 10 Fragments arranged by size: 2781 1691 10 BlpI GC'TnA_GC Cuts at: 0 3913 4482 Size: 3913 569 Bme1580I G_kGCm'C Cuts at: 0 1331 2279 2557 3864 4482 Size: 1331 948 278 1307 618 Fragments arranged by size: 1331 1307 948 618 278 BmrI ACTGGGnnnn_n' Cuts at: 0 110 2219 4482 Size: 110 2109 2263 Fragments arranged by size: 2263 2109 110 BmtI G_CTAG'C Cuts at: 0 1765 2369 4482 Size: 1765 604 2113 Fragments arranged by size: 2113 1765 604 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 254 389 1295 1835 2447 2809 2941 2959 Size: 254 135 906 540 612 362 132 18 Cuts at: 2959 3393 4461 4482 Size: 434 1068 21 Fragments arranged by size: 1068 906 612 540 434 362 254 135 132 21 18 Bpu10I CC'TnA_GC Cuts at: 0 2062 3472 4482 Size: 2062 1410 1010 Fragments arranged by size: 2062 1410 1010 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2163 4482 Size: 2163 2319 BsaI GGTCTCn'nnnn_ Cuts at: 0 4440 4482 Size: 4440 42 BsaBI GATnn'nnATC Cuts at: 0 1541 4482 Size: 1541 2941 BsaHI Gr'CG_yC Cuts at: 0 2603 4482 Size: 2603 1879 BsaWI w'CCGG_w Cuts at: 0 4319 4482 Size: 4319 163 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 227 257 563 593 2780 2810 4087 4117 Size: 227 30 306 30 2187 30 1277 30 Cuts at: 4117 4482 Size: 365 Fragments arranged by size: 2187 1277 365 306 227 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 401 803 1007 2743 3958 4479 4482 Size: 401 402 204 1736 1215 521 3 Fragments arranged by size: 1736 1215 521 402 401 204 3 BseYI C'CCAG_C Cuts at: 0 664 669 1671 2746 3009 4482 Size: 664 5 1002 1075 263 1473 Fragments arranged by size: 1473 1075 1002 664 263 5 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1634 4482 Size: 1634 2848 BsiHKAI G_wGCw'C Cuts at: 0 374 780 1035 1331 2279 2687 3864 4482 Size: 374 406 255 296 948 408 1177 618 Fragments arranged by size: 1177 948 618 408 406 374 296 255 BsmI GAATG_Cn' Cuts at: 0 1076 1281 1682 3302 4482 Size: 1076 205 401 1620 1180 Fragments arranged by size: 1620 1180 1076 401 205 Bsp1286I G_dGCh'C Cuts at: 0 374 780 1035 1331 2279 2557 2687 3113 Size: 374 406 255 296 948 278 130 426 Cuts at: 3113 3492 3864 4271 4482 Size: 379 372 407 211 Fragments arranged by size: 948 426 407 406 379 374 372 296 278 255 211 130 BspEI T'CCGG_A Cuts at: 0 4319 4482 Size: 4319 163 BspHI T'CATG_A Cuts at: 0 456 1415 3459 3681 4374 4482 Size: 456 959 2044 222 693 108 Fragments arranged by size: 2044 959 693 456 222 108 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 135 167 2332 3291 4482 Size: 135 32 2165 959 1191 Fragments arranged by size: 2165 1191 959 135 32 BsrDI GCAATG_nn' Cuts at: 0 875 983 1222 1963 4482 Size: 875 108 239 741 2519 Fragments arranged by size: 2519 875 741 239 108 BsrFI r'CCGG_y Cuts at: 0 1825 4482 Size: 1825 2657 BsrGI T'GTAC_A Cuts at: 0 546 852 1266 4413 4482 Size: 546 306 414 3147 69 Fragments arranged by size: 3147 546 414 306 69 BssSI C'ACGA_G Cuts at: 0 971 4482 Size: 971 3511 BstEII G'GTnAC_C Cuts at: 0 1472 3391 4482 Size: 1472 1919 1091 Fragments arranged by size: 1919 1472 1091 BstXI CCAn_nnnn'nTGG Cuts at: 0 694 4009 4482 Size: 694 3315 473 Fragments arranged by size: 3315 694 473 BstYI r'GATC_y Cuts at: 0 1065 1691 2220 4472 4482 Size: 1065 626 529 2252 10 Fragments arranged by size: 2252 1065 626 529 10 Bsu36I CC'TnA_GG Cuts at: 0 4090 4482 Size: 4090 392 BtgI C'CryG_G Cuts at: 0 530 642 651 3026 3513 4482 Size: 530 112 9 2375 487 969 Fragments arranged by size: 2375 969 530 487 112 9 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1349 4482 Size: 1349 3133 BtsI GCAGTG_nn' Cuts at: 0 329 621 1617 1836 2277 2615 2632 3314 Size: 329 292 996 219 441 338 17 682 Cuts at: 3314 3377 3706 3917 4482 Size: 63 329 211 565 Fragments arranged by size: 996 682 565 441 338 329 329 292 219 211 63 17 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 2720 2755 4482 Size: 2720 35 1727 Fragments arranged by size: 2720 1727 35 DraI TTT'AAA Cuts at: 0 1685 1859 4482 Size: 1685 174 2623 Fragments arranged by size: 2623 1685 174 DraIII CAC_nnn'GTG Cuts at: 0 3169 4432 4482 Size: 3169 1263 50 Fragments arranged by size: 3169 1263 50 EaeI y'GGCC_r Cuts at: 0 326 2676 4482 Size: 326 2350 1806 Fragments arranged by size: 2350 1806 326 EarI CTCTTCn'nnn_ Cuts at: 0 1040 4116 4482 Size: 1040 3076 366 Fragments arranged by size: 3076 1040 366 EcoICRI GAG'CTC Cuts at: 0 778 4482 Size: 778 3704 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 254 389 812 1021 1295 1835 1862 2230 Size: 254 135 423 209 274 540 27 368 Cuts at: 2230 2447 2531 2809 2816 2941 2959 3393 4040 Size: 217 84 278 7 125 18 434 647 Cuts at: 4040 4461 4482 Size: 421 21 Fragments arranged by size: 647 540 434 423 421 368 278 274 254 217 209 135 125 84 27 21 18 7 EcoNI CCTnn'n_nnAGG Cuts at: 0 2261 2834 4482 Size: 2261 573 1648 Fragments arranged by size: 2261 1648 573 EcoO109I rG'GnC_Cy Cuts at: 0 1432 1493 2171 4482 Size: 1432 61 678 2311 Fragments arranged by size: 2311 1432 678 61 EcoRI G'AATT_C Cuts at: 0 3477 4482 Size: 3477 1005 EcoRV GAT'ATC Cuts at: 0 1560 4482 Size: 1560 2922 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 61 204 1087 4482 Size: 61 143 883 3395 Fragments arranged by size: 3395 883 143 61 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 2373 2405 2839 2865 2871 2897 2913 2945 Size: 2373 32 434 26 6 26 16 32 Cuts at: 2945 3934 3966 4093 4125 4387 4419 4482 Size: 989 32 127 32 262 32 63 Fragments arranged by size: 2373 989 434 262 127 63 32 32 32 32 32 26 26 16 6 HincII GTy'rAC Cuts at: 0 1484 3205 3324 4240 4482 Size: 1484 1721 119 916 242 Fragments arranged by size: 1721 1484 916 242 119 KpnI G_GTAC'C Cuts at: 0 1168 2967 4482 Size: 1168 1799 1515 Fragments arranged by size: 1799 1515 1168 MfeI C'AATT_G Cuts at: 0 3386 4482 Size: 3386 1096 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1156 2729 4482 Size: 1156 1573 1753 Fragments arranged by size: 1753 1573 1156 MscI TGG'CCA Cuts at: 0 328 2678 4482 Size: 328 2350 1804 Fragments arranged by size: 2350 1804 328 MslI CAynn'nnrTG Cuts at: 0 180 1148 2464 3869 4007 4482 Size: 180 968 1316 1405 138 475 Fragments arranged by size: 1405 1316 968 475 180 138 MspA1I CmG'CkG Cuts at: 0 2208 2623 4482 Size: 2208 415 1859 Fragments arranged by size: 2208 1859 415 NaeI GCC'GGC Cuts at: 0 1827 4482 Size: 1827 2655 NcoI C'CATG_G Cuts at: 0 530 651 3026 3513 4482 Size: 530 121 2375 487 969 Fragments arranged by size: 2375 969 530 487 121 NgoMIV G'CCGG_C Cuts at: 0 1825 4482 Size: 1825 2657 NheI G'CTAG_C Cuts at: 0 1761 2365 4482 Size: 1761 604 2117 Fragments arranged by size: 2117 1761 604 NsiI A_TGCA'T Cuts at: 0 301 4482 Size: 301 4181 NspI r_CATG'y Cuts at: 0 179 1188 1890 4482 Size: 179 1009 702 2592 Fragments arranged by size: 2592 1009 702 179 PflMI CCAn_nnn'nTGG Cuts at: 0 643 3199 4482 Size: 643 2556 1283 Fragments arranged by size: 2556 1283 643 PfoI T'CCnGG_A Cuts at: 0 231 381 4482 Size: 231 150 4101 Fragments arranged by size: 4101 231 150 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 4087 4119 4482 Size: 4087 32 363 Fragments arranged by size: 4087 363 32 PpuMI rG'GwC_Cy Cuts at: 0 1432 1493 4482 Size: 1432 61 2989 Fragments arranged by size: 2989 1432 61 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 1259 1291 4482 Size: 1259 32 3191 Fragments arranged by size: 3191 1259 32 PstI C_TGCA'G Cuts at: 0 2037 2622 2639 3321 4482 Size: 2037 585 17 682 1161 Fragments arranged by size: 2037 1161 682 585 17 PvuII CAG'CTG Cuts at: 0 2208 2623 4482 Size: 2208 415 1859 Fragments arranged by size: 2208 1859 415 SacI G_AGCT'C Cuts at: 0 780 4482 Size: 780 3702 SanDI GG'GwC_CC Cuts at: 0 1493 4482 Size: 1493 2989 SapI GCTCTTCn'nnn_ Cuts at: 0 1040 4482 Size: 1040 3442 SexAI A'CCwGG_T Cuts at: 0 1239 3932 4482 Size: 1239 2693 550 Fragments arranged by size: 2693 1239 550 SfcI C'TryA_G Cuts at: 0 1427 2033 2113 2618 2635 2896 3317 4308 Size: 1427 606 80 505 17 261 421 991 Cuts at: 4308 4482 Size: 174 Fragments arranged by size: 1427 991 606 505 421 261 174 80 17 SmaI CCC'GGG Cuts at: 0 2162 4482 Size: 2162 2320 SmlI C'TyrA_G Cuts at: 0 2142 4482 Size: 2142 2340 SphI G_CATG'C Cuts at: 0 1188 4482 Size: 1188 3294 SspI AAT'ATT Cuts at: 0 3550 4482 Size: 3550 932 StuI AGG'CCT Cuts at: 0 659 4482 Size: 659 3823 StyI C'CwwG_G Cuts at: 0 212 530 651 715 999 1477 1498 2985 Size: 212 318 121 64 284 478 21 1487 Cuts at: 2985 3026 3513 4138 4482 Size: 41 487 625 344 Fragments arranged by size: 1487 625 487 478 344 318 284 212 121 64 41 21 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1482 3220 3749 4028 4482 Size: 1482 1738 529 279 454 Fragments arranged by size: 1738 1482 529 454 279 TatI w'GTAC_w Cuts at: 0 546 852 1266 1550 1593 3328 4413 4482 Size: 546 306 414 284 43 1735 1085 69 Fragments arranged by size: 1735 1085 546 414 306 284 69 43 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 227 259 3105 3129 3137 3161 4482 Size: 227 32 2846 24 8 24 1321 Fragments arranged by size: 2846 1321 227 32 24 24 8 Tth111I GACn'n_nGTC Cuts at: 0 3890 3934 4162 4482 Size: 3890 44 228 320 Fragments arranged by size: 3890 320 228 44 XbaI T'CTAG_A Cuts at: 0 3507 3777 4482 Size: 3507 270 705 Fragments arranged by size: 3507 705 270 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 4389 4482 Size: 4389 93 XmaI C'CCGG_G Cuts at: 0 2160 4482 Size: 2160 2322 XmnI GAAnn'nnTTC Cuts at: 0 499 1644 4482 Size: 499 1145 2838 Fragments arranged by size: 2838 1145 499 Enzymes that do cut: AccI Acc65I AcuI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AvaI BanI BanII BbsI BbvCI BcgI BclI BfrBI BglI BglII BlpI Bme1580I BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrDI BsrFI BsrGI BssSI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraI DraIII EaeI EarI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI Hin4I HincII KpnI MfeI MmeI MscI MslI MspA1I NaeI NcoI NgoMIV NheI NsiI NspI PflMI PfoI PpiI PpuMI PsrI PstI PvuII SacI SanDI SapI SexAI SfcI SmaI SmlI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AarI AatII AclI AfeI AflII AflIII AgeI ApaI AscI AsiSI AvrII BaeI BamHI BbeI BciVI BmgBI BplI BsaAI BsiEI BsiWI BsmBI BsrBI BssHII BstAPI BstBI BstZ17I ClaI DrdI EagI EciI FseI FspI FspAI HaeII HindIII HpaI KasI MluI NarI NdeI NotI NruI PacI PasI PciI PmeI PmlI PshAI PsiI PspOMI PspXI PvuI RsrII SacII SalI SbfI ScaI SfiI SfoI SgfI SgrAI SnaBI SpeI SrfI SwaI XhoI ZraI