(Linear) (Six-base) MAPSORT of: KIAA0213.seq Check: 5992 from: 1 to: 4674 KIAA0213.orf With 182 enzymes: SgfI * March 22, 2012 15:29 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 2811 3934 4674 Size: 2811 1123 740 Fragments arranged by size: 2811 1123 740 AccI GT'mk_AC Cuts at: 0 908 1554 1589 3938 4674 Size: 908 646 35 2349 736 Fragments arranged by size: 2349 908 736 646 35 Acc65I G'GTAC_C Cuts at: 0 244 1410 3459 3773 4674 Size: 244 1166 2049 314 901 Fragments arranged by size: 2049 1166 901 314 244 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 944 1105 1621 1831 1912 1996 2422 2989 Size: 944 161 516 210 81 84 426 567 Cuts at: 2989 4138 4403 4586 4674 Size: 1149 265 183 88 Fragments arranged by size: 1149 944 567 516 426 265 210 183 161 88 84 81 AflIII A'CryG_T Cuts at: 0 3029 4161 4674 Size: 3029 1132 513 Fragments arranged by size: 3029 1132 513 AhdI GACnn_n'nnGTC Cuts at: 0 650 1452 2933 4674 Size: 650 802 1481 1741 Fragments arranged by size: 1741 1481 802 650 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1931 4674 Size: 1931 2743 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1829 1861 3016 3048 4674 Size: 1829 32 1155 32 1626 Fragments arranged by size: 1829 1626 1155 32 32 AlwNI CAG_nnn'CTG Cuts at: 0 601 2967 4674 Size: 601 2366 1707 Fragments arranged by size: 2366 1707 601 ApoI r'AATT_y Cuts at: 0 1251 1714 2190 2299 2326 2491 2561 3043 Size: 1251 463 476 109 27 165 70 482 Cuts at: 3043 4674 Size: 1631 Fragments arranged by size: 1631 1251 482 476 463 165 109 70 27 AseI AT'TA_AT Cuts at: 0 884 4276 4674 Size: 884 3392 398 Fragments arranged by size: 3392 884 398 AvaI C'yCGr_G Cuts at: 0 112 130 4674 Size: 112 18 4544 Fragments arranged by size: 4544 112 18 AvrII C'CTAG_G Cuts at: 0 1405 4674 Size: 1405 3269 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 947 980 4674 Size: 947 33 3694 Fragments arranged by size: 3694 947 33 BamHI G'GATC_C Cuts at: 0 2123 4674 Size: 2123 2551 BanI G'GyrC_C Cuts at: 0 244 1410 2752 3459 3773 4246 4377 4674 Size: 244 1166 1342 707 314 473 131 297 Fragments arranged by size: 1342 1166 707 473 314 297 244 131 BanII G_rGCy'C Cuts at: 0 2400 2411 2730 4079 4674 Size: 2400 11 319 1349 595 Fragments arranged by size: 2400 1349 595 319 11 BbsI GAAGACnn'nnnn_ Cuts at: 0 212 4674 Size: 212 4462 BbvCI CC'TCA_GC Cuts at: 0 565 2609 3053 4674 Size: 565 2044 444 1621 Fragments arranged by size: 2044 1621 565 444 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2704 2738 3918 3952 4674 Size: 2704 34 1180 34 722 Fragments arranged by size: 2704 1180 722 34 34 BclI T'GATC_A Cuts at: 0 465 4674 Size: 465 4209 BfrBI ATG'CAT Cuts at: 0 2980 3374 4674 Size: 2980 394 1300 Fragments arranged by size: 2980 1300 394 BlpI GC'TnA_GC Cuts at: 0 587 4674 Size: 587 4087 Bme1580I G_kGCm'C Cuts at: 0 163 608 1234 1671 2755 4674 Size: 163 445 626 437 1084 1919 Fragments arranged by size: 1919 1084 626 445 437 163 BmrI ACTGGGnnnn_n' Cuts at: 0 2503 4294 4674 Size: 2503 1791 380 Fragments arranged by size: 2503 1791 380 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1551 1940 2050 3494 4455 4674 Size: 1551 389 110 1444 961 219 Fragments arranged by size: 1551 1444 961 389 219 110 Bpu10I CC'TnA_GC Cuts at: 0 565 2609 3053 4674 Size: 565 2044 444 1621 Fragments arranged by size: 2044 1621 565 444 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1501 1956 2132 3263 3366 3585 3876 4615 Size: 1501 455 176 1131 103 219 291 739 Cuts at: 4615 4674 Size: 59 Fragments arranged by size: 1501 1131 739 455 291 219 176 103 59 BsaI GGTCTCn'nnnn_ Cuts at: 0 109 1050 1905 2510 4674 Size: 109 941 855 605 2164 Fragments arranged by size: 2164 941 855 605 109 BsaAI yAC'GTr Cuts at: 0 1672 4674 Size: 1672 3002 BsaBI GATnn'nnATC Cuts at: 0 545 2696 4674 Size: 545 2151 1978 Fragments arranged by size: 2151 1978 545 BsaWI w'CCGG_w Cuts at: 0 105 1413 4674 Size: 105 1308 3261 Fragments arranged by size: 3261 1308 105 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 20 82 1792 1819 2240 2626 3628 3656 Size: 20 62 1710 27 421 386 1002 28 Cuts at: 3656 3801 4624 4674 Size: 145 823 50 Fragments arranged by size: 1710 1002 823 421 386 145 62 50 28 27 20 BseYI C'CCAG_C Cuts at: 0 256 1514 2747 4146 4674 Size: 256 1258 1233 1399 528 Fragments arranged by size: 1399 1258 1233 528 256 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 611 1189 1768 4674 Size: 611 578 579 2906 Fragments arranged by size: 2906 611 579 578 BsiEI CG_ry'CG Cuts at: 0 1695 4427 4674 Size: 1695 2732 247 Fragments arranged by size: 2732 1695 247 BsiHKAI G_wGCw'C Cuts at: 0 490 1524 1537 2411 4079 4499 4674 Size: 490 1034 13 874 1668 420 175 Fragments arranged by size: 1668 1034 874 490 420 175 13 BsmI GAATG_Cn' Cuts at: 0 357 2273 3376 4674 Size: 357 1916 1103 1298 Fragments arranged by size: 1916 1298 1103 357 Bsp1286I G_dGCh'C Cuts at: 0 163 490 608 1234 1524 1537 1671 2400 Size: 163 327 118 626 290 13 134 729 Cuts at: 2400 2411 2730 2755 4079 4499 4674 Size: 11 319 25 1324 420 175 Fragments arranged by size: 1324 729 626 420 327 319 290 175 163 134 118 25 13 11 BspHI T'CATG_A Cuts at: 0 1020 4674 Size: 1020 3654 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 633 1047 1848 1923 2811 3318 3934 4674 Size: 633 414 801 75 888 507 616 740 Fragments arranged by size: 888 801 740 633 616 507 414 75 BsrDI GCAATG_nn' Cuts at: 0 588 1108 2258 3012 3110 4193 4674 Size: 588 520 1150 754 98 1083 481 Fragments arranged by size: 1150 1083 754 588 520 481 98 BsrFI r'CCGG_y Cuts at: 0 2940 4674 Size: 2940 1734 BsrGI T'GTAC_A Cuts at: 0 480 3920 4094 4674 Size: 480 3440 174 580 Fragments arranged by size: 3440 580 480 174 BssSI C'ACGA_G Cuts at: 0 4394 4674 Size: 4394 280 BstBI TT'CG_AA Cuts at: 0 1835 4031 4674 Size: 1835 2196 643 Fragments arranged by size: 2196 1835 643 BstEII G'GTnAC_C Cuts at: 0 3864 4674 Size: 3864 810 BstXI CCAn_nnnn'nTGG Cuts at: 0 4219 4674 Size: 4219 455 BstYI r'GATC_y Cuts at: 0 434 514 546 1722 2076 2123 4674 Size: 434 80 32 1176 354 47 2551 Fragments arranged by size: 2551 1176 434 354 80 47 32 Bsu36I CC'TnA_GG Cuts at: 0 2786 4674 Size: 2786 1888 BtgI C'CryG_G Cuts at: 0 62 1817 3608 4413 4674 Size: 62 1755 1791 805 261 Fragments arranged by size: 1791 1755 805 261 62 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 2138 2931 4130 4674 Size: 2138 793 1199 544 Fragments arranged by size: 2138 1199 793 544 BtsI GCAGTG_nn' Cuts at: 0 979 1794 2358 4587 4674 Size: 979 815 564 2229 87 Fragments arranged by size: 2229 979 815 564 87 ClaI AT'CG_AT Cuts at: 0 2690 3549 4674 Size: 2690 859 1125 Fragments arranged by size: 2690 1125 859 DraI TTT'AAA Cuts at: 0 668 2165 4674 Size: 668 1497 2509 Fragments arranged by size: 2509 1497 668 EaeI y'GGCC_r Cuts at: 0 1270 3378 3956 4424 4674 Size: 1270 2108 578 468 250 Fragments arranged by size: 2108 1270 578 468 250 EagI C'GGCC_G Cuts at: 0 4424 4674 Size: 4424 250 EarI CTCTTCn'nnn_ Cuts at: 0 1124 2066 2416 2611 4127 4674 Size: 1124 942 350 195 1516 547 Fragments arranged by size: 1516 1124 942 547 350 195 EcoICRI GAG'CTC Cuts at: 0 2409 4077 4674 Size: 2409 1668 597 Fragments arranged by size: 2409 1668 597 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 944 1105 1551 1621 1831 1912 1940 1996 Size: 944 161 446 70 210 81 28 56 Cuts at: 1996 2050 2422 2989 3494 4138 4403 4455 4586 Size: 54 372 567 505 644 265 52 131 Cuts at: 4586 4674 Size: 88 Fragments arranged by size: 944 644 567 505 446 372 265 210 161 131 88 81 70 56 54 52 28 EcoNI CCTnn'n_nnAGG Cuts at: 0 1662 3410 4674 Size: 1662 1748 1264 Fragments arranged by size: 1748 1662 1264 EcoO109I rG'GnC_Cy Cuts at: 0 1971 2472 3584 3724 4674 Size: 1971 501 1112 140 950 Fragments arranged by size: 1971 1112 950 501 140 EcoRI G'AATT_C Cuts at: 0 2491 4674 Size: 2491 2183 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 2427 3885 4674 Size: 2427 1458 789 Fragments arranged by size: 2427 1458 789 FspI TGC'GCA Cuts at: 0 2858 4674 Size: 2858 1816 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 106 138 636 668 1438 1453 1470 1485 Size: 106 32 498 32 770 15 17 15 Cuts at: 1485 2914 2919 2946 2951 4674 Size: 1429 5 27 5 1723 Fragments arranged by size: 1723 1429 770 498 106 32 32 27 17 15 15 5 5 HincII GTy'rAC Cuts at: 0 287 909 2802 3939 4674 Size: 287 622 1893 1137 735 Fragments arranged by size: 1893 1137 735 622 287 HindIII A'AGCT_T Cuts at: 0 589 700 1477 2245 2879 2954 3201 4674 Size: 589 111 777 768 634 75 247 1473 Fragments arranged by size: 1473 777 768 634 589 247 111 75 KpnI G_GTAC'C Cuts at: 0 248 1414 3463 3777 4674 Size: 248 1166 2049 314 897 Fragments arranged by size: 2049 1166 897 314 248 MfeI C'AATT_G Cuts at: 0 3302 4674 Size: 3302 1372 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1056 1340 2384 4674 Size: 1056 284 1044 2290 Fragments arranged by size: 2290 1056 1044 284 MscI TGG'CCA Cuts at: 0 1272 3380 3958 4674 Size: 1272 2108 578 716 Fragments arranged by size: 2108 1272 716 578 MslI CAynn'nnrTG Cuts at: 0 2821 4102 4217 4418 4459 4490 4674 Size: 2821 1281 115 201 41 31 184 Fragments arranged by size: 2821 1281 201 184 115 41 31 MspA1I CmG'CkG Cuts at: 0 13 1950 2647 2747 2967 4674 Size: 13 1937 697 100 220 1707 Fragments arranged by size: 1937 1707 697 220 100 13 NcoI C'CATG_G Cuts at: 0 62 1817 4413 4674 Size: 62 1755 2596 261 Fragments arranged by size: 2596 1755 261 62 NsiI A_TGCA'T Cuts at: 0 2982 3376 4674 Size: 2982 394 1298 Fragments arranged by size: 2982 1298 394 NspI r_CATG'y Cuts at: 0 285 817 2820 3033 4165 4674 Size: 285 532 2003 213 1132 509 Fragments arranged by size: 2003 1132 532 509 285 213 PasI CC'CwG_GG Cuts at: 0 4356 4674 Size: 4356 318 PciI A'CATG_T Cuts at: 0 3029 4161 4674 Size: 3029 1132 513 Fragments arranged by size: 3029 1132 513 PfoI T'CCnGG_A Cuts at: 0 987 1157 2522 4674 Size: 987 170 1365 2152 Fragments arranged by size: 2152 1365 987 170 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1916 1948 4674 Size: 1916 32 2726 Fragments arranged by size: 2726 1916 32 PpuMI rG'GwC_Cy Cuts at: 0 1971 2472 3584 3724 4674 Size: 1971 501 1112 140 950 Fragments arranged by size: 1971 1112 950 501 140 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 1993 2025 4674 Size: 1993 32 2649 Fragments arranged by size: 2649 1993 32 PstI C_TGCA'G Cuts at: 0 2021 2652 4014 4674 Size: 2021 631 1362 660 Fragments arranged by size: 2021 1362 660 631 PvuI CG_AT'CG Cuts at: 0 1695 4674 Size: 1695 2979 PvuII CAG'CTG Cuts at: 0 1950 2647 2747 2967 4674 Size: 1950 697 100 220 1707 Fragments arranged by size: 1950 1707 697 220 100 SacI G_AGCT'C Cuts at: 0 2411 4079 4674 Size: 2411 1668 595 Fragments arranged by size: 2411 1668 595 SalI G'TCGA_C Cuts at: 0 907 3937 4674 Size: 907 3030 737 Fragments arranged by size: 3030 907 737 SapI GCTCTTCn'nnn_ Cuts at: 0 1124 2416 4674 Size: 1124 1292 2258 Fragments arranged by size: 2258 1292 1124 ScaI AGT'ACT Cuts at: 0 2002 3091 4111 4674 Size: 2002 1089 1020 563 Fragments arranged by size: 2002 1089 1020 563 SfcI C'TryA_G Cuts at: 0 576 614 2017 2134 2282 2648 4010 4674 Size: 576 38 1403 117 148 366 1362 664 Fragments arranged by size: 1403 1362 664 576 366 148 117 38 SmlI C'TyrA_G Cuts at: 0 1480 1935 2147 3278 3345 3600 3855 4594 Size: 1480 455 212 1131 67 255 255 739 Cuts at: 4594 4674 Size: 80 Fragments arranged by size: 1480 1131 739 455 255 255 212 80 67 SpeI A'CTAG_T Cuts at: 0 2335 2838 4674 Size: 2335 503 1836 Fragments arranged by size: 2335 1836 503 SphI G_CATG'C Cuts at: 0 817 2820 4674 Size: 817 2003 1854 Fragments arranged by size: 2003 1854 817 SspI AAT'ATT Cuts at: 0 4028 4674 Size: 4028 646 StuI AGG'CCT Cuts at: 0 4479 4674 Size: 4479 195 StyI C'CwwG_G Cuts at: 0 62 570 1405 1817 4413 4480 4674 Size: 62 508 835 412 2596 67 194 Fragments arranged by size: 2596 835 508 412 194 67 62 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 133 317 499 4674 Size: 133 184 182 4175 Fragments arranged by size: 4175 184 182 133 TatI w'GTAC_w Cuts at: 0 480 1085 2000 3089 3920 4094 4109 4674 Size: 480 605 915 1089 831 174 15 565 Fragments arranged by size: 1089 915 831 605 565 480 174 15 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 377 409 4674 Size: 377 32 4265 Fragments arranged by size: 4265 377 32 Tth111I GACn'n_nGTC Cuts at: 0 120 1559 4674 Size: 120 1439 3115 Fragments arranged by size: 3115 1439 120 XbaI T'CTAG_A Cuts at: 0 201 4674 Size: 201 4473 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1727 3018 4333 4613 4674 Size: 1727 1291 1315 280 61 Fragments arranged by size: 1727 1315 1291 280 61 XmnI GAAnn'nnTTC Cuts at: 0 2248 3149 4027 4674 Size: 2248 901 878 647 Fragments arranged by size: 2248 901 878 647 Enzymes that do cut: AarI AccI Acc65I AcuI AflIII AhdI AlfI AloI AlwNI ApoI AseI AvaI AvrII BaeI BamHI BanI BanII BbsI BbvCI BcgI BclI BfrBI BlpI Bme1580I BmrI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaWI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrDI BsrFI BsrGI BssSI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI DraI EaeI EagI EarI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI Hin4I HincII HindIII KpnI MfeI MmeI MscI MslI MspA1I NcoI NsiI NspI PasI PciI PfoI PpiI PpuMI PsrI PstI PvuI PvuII SacI SalI SapI ScaI SfcI SmlI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmnI Enzymes that do not cut: AatII AclI AfeI AflII AgeI AleI ApaI ApaLI AscI AsiSI BbeI BciVI BglI BglII BmgBI BmtI BplI BsaHI BsaXI BsiWI BsmBI BspEI BsrBI BssHII BstAPI BstZ17I CspCI DraIII DrdI EciI EcoRV FseI FspAI HaeII HpaI KasI MluI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PflMI PmeI PmlI PshAI PsiI PspOMI PspXI RsrII SacII SanDI SbfI SexAI SfiI SfoI SgfI SgrAI SmaI SnaBI SrfI SwaI XhoI XmaI ZraI