(Circular) (Six-base) MAPSORT of: pFN21AB5785.seq Check: 8782 from: 1 to: 7144 pFN21AB5785 7144 bp With 182 enzymes: SgfI * March 8, 2011 15:38 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2329 2329 Size: 7144 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4112 4954 278 Size: 53 83 186 936 2576 842 2468 Fragments arranged by size: 2576 2468 936 842 186 83 53 AccI GT'mk_AC Cuts at: 1937 4487 1937 Size: 2550 4594 Acc65I G'GTAC_C Cuts at: 4465 4465 Size: 7144 AclI AA'CG_TT Cuts at: 1563 5271 5644 1563 Size: 3708 373 3063 Fragments arranged by size: 3708 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2685 3316 5207 6591 6859 1632 Size: 1053 631 1891 1384 268 1917 Fragments arranged by size: 1917 1891 1384 1053 631 268 AfeI AGC'GCT Cuts at: 2861 2861 Size: 7144 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6947 AflIII A'CryG_T Cuts at: 1203 2583 4167 6043 7020 1203 Size: 1380 1584 1876 977 1327 Fragments arranged by size: 1876 1584 1380 1327 977 AgeI A'CCGG_T Cuts at: 5975 5975 Size: 7144 AhdI GACnn_n'nnGTC Cuts at: 5873 5873 Size: 7144 AleI CACnn'nnGTG Cuts at: 1166 2733 1166 Size: 1567 5577 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 3971 3981 1184 Size: 2787 10 4347 Fragments arranged by size: 4347 2787 10 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3476 3508 3476 Size: 32 7112 AlwNI CAG_nnn'CTG Cuts at: 3049 4357 4887 6459 3049 Size: 1308 530 1572 3734 Fragments arranged by size: 3734 1572 1308 530 ApaLI G'TGCA_C Cuts at: 3939 5201 6357 3939 Size: 1262 1156 4726 Fragments arranged by size: 4726 1262 1156 ApoI r'AATT_y Cuts at: 1493 2975 3261 4453 4679 4831 6940 1493 Size: 1482 286 1192 226 152 2109 1697 Fragments arranged by size: 2109 1697 1482 1192 286 226 152 AseI AT'TA_AT Cuts at: 160 1032 5698 160 Size: 872 4666 1606 Fragments arranged by size: 4666 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 7144 AvaI C'yCGr_G Cuts at: 1870 1943 3090 3251 4469 1870 Size: 73 1147 161 1218 4545 Fragments arranged by size: 4545 1218 1147 161 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2040 2073 2040 Size: 33 7111 BamHI G'GATC_C Cuts at: 3246 4474 4841 3246 Size: 1228 367 5549 Fragments arranged by size: 5549 1228 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2255 3519 4465 5920 618 Size: 325 217 627 468 1264 946 1455 1842 Fragments arranged by size: 1842 1455 1264 946 627 468 325 217 BanII G_rGCy'C Cuts at: 1391 2091 2816 3063 3408 3603 3638 4463 1391 Size: 700 725 247 345 195 35 825 4072 Fragments arranged by size: 4072 825 725 700 345 247 195 35 BbeI G_GCGC'C Cuts at: 3523 3523 Size: 7144 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2398 928 Size: 971 499 5674 Fragments arranged by size: 5674 971 499 BbvCI CC'TCA_GC Cuts at: 2432 2432 Size: 7144 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 5335 5369 1903 Size: 34 3398 34 3678 Fragments arranged by size: 3678 3398 34 34 BciVI GTATCCnnnnn_n' Cuts at: 5036 6246 5036 Size: 1210 5934 BclI T'GATC_A Cuts at: 1548 1548 Size: 7144 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2189 2363 4161 Size: 107 122 71 631 605 517 174 1798 Cuts at: 4161 5755 136 Size: 1594 1525 Fragments arranged by size: 1798 1594 1525 631 605 517 174 122 107 71 BglII A'GATC_T Cuts at: 7139 7139 Size: 7144 BlpI GC'TnA_GC Cuts at: 4561 4561 Size: 7144 Bme1580I G_kGCm'C Cuts at: 1790 2680 3345 3771 3943 5205 6361 1790 Size: 890 665 426 172 1262 1156 2573 Fragments arranged by size: 2573 1262 1156 890 665 426 172 BmgBI CAC'GTC Cuts at: 1318 2554 2608 1318 Size: 1236 54 5854 Fragments arranged by size: 5854 1236 54 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2566 3439 4875 Size: 416 53 83 399 24 1149 873 1436 Cuts at: 4875 5833 442 Size: 958 1753 Fragments arranged by size: 1753 1436 1149 958 873 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 7144 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2821 2821 Size: 7144 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2285 2523 2654 4063 4276 5804 1239 Size: 1046 238 131 1409 213 1528 2579 Fragments arranged by size: 2579 1528 1409 1046 238 213 131 Bpu10I CC'TnA_GC Cuts at: 2432 2432 Size: 7144 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2830 5269 6134 6432 2830 Size: 2439 865 298 3542 Fragments arranged by size: 3542 2439 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3558 5807 882 Size: 617 2059 2249 2219 Fragments arranged by size: 2249 2219 2059 617 BsaAI yAC'GTr Cuts at: 493 1204 3127 4935 493 Size: 711 1923 1808 2702 Fragments arranged by size: 2702 1923 1808 711 BsaBI GATnn'nnATC Cuts at: 2996 7138 2996 Size: 4142 3002 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3520 4109 4951 5333 Size: 53 83 186 936 1987 589 842 382 Cuts at: 5333 5968 275 Size: 635 1451 Fragments arranged by size: 1987 1451 936 842 635 589 382 186 83 53 BsaWI w'CCGG_w Cuts at: 5577 5975 6249 6396 6807 5577 Size: 398 274 147 411 5914 Fragments arranged by size: 5914 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2037 2067 3425 3455 3476 Size: 30 165 30 634 30 1358 30 21 Cuts at: 3476 3506 1178 Size: 30 4816 Fragments arranged by size: 4816 1358 634 165 30 30 30 30 30 21 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2351 4355 1186 Size: 1165 2004 3975 Fragments arranged by size: 3975 2004 1165 BseYI C'CCAG_C Cuts at: 3968 6347 6843 3968 Size: 2379 496 4269 Fragments arranged by size: 4269 2379 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 4259 1163 Size: 573 2523 4048 Fragments arranged by size: 4048 2523 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3000 4594 5355 6383 1540 Size: 275 186 999 1594 761 1028 2301 Fragments arranged by size: 2301 1594 1028 999 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3063 3408 3909 3943 5205 5290 6361 3063 Size: 345 501 34 1262 85 1071 3846 Fragments arranged by size: 3846 1262 1071 501 345 85 34 BsmI GAATG_Cn' Cuts at: 3929 4655 4748 3929 Size: 726 93 6325 Fragments arranged by size: 6325 726 93 BsmBI CGTCTCn'nnnn_ Cuts at: 4100 4100 Size: 7144 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2091 2680 2816 3063 3345 3408 3603 Size: 399 301 589 136 247 282 63 195 Cuts at: 3603 3638 3771 3909 3943 4463 5205 5290 6361 Size: 35 133 138 34 520 742 85 1071 Cuts at: 6361 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 589 520 399 301 282 247 195 138 136 133 85 63 35 34 BspEI T'CCGG_A Cuts at: 6807 6807 Size: 7144 BspHI T'CATG_A Cuts at: 5033 6763 5033 Size: 1730 5414 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2329 3999 4499 844 Size: 1485 1670 500 3489 Fragments arranged by size: 3489 1670 1485 500 BsrBI CCG'CTC Cuts at: 1394 1823 4214 5031 1394 Size: 429 2391 817 3507 Fragments arranged by size: 3507 2391 817 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3495 5639 5813 65 Size: 1183 2247 2144 174 1396 Fragments arranged by size: 2247 2144 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2526 3516 5788 5975 1700 Size: 110 716 990 2272 187 2869 Fragments arranged by size: 2869 2272 990 716 187 110 BsrGI T'GTAC_A Cuts at: 96 2586 96 Size: 2490 4654 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 7144 BssSI C'ACGA_G Cuts at: 5204 6216 5204 Size: 1012 6132 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 7144 BstBI TT'CG_AA Cuts at: 4303 5948 4303 Size: 1645 5499 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 7144 BstYI r'GATC_y Cuts at: 1972 2298 3246 3574 4474 4841 5226 5243 6695 Size: 326 948 328 900 367 385 17 1452 Cuts at: 6695 6781 6793 7139 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 948 900 385 367 346 328 326 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2175 2368 2175 Size: 193 6951 BtgI C'CryG_G Cuts at: 513 1065 2040 2466 2734 4285 513 Size: 552 975 426 268 1551 3372 Fragments arranged by size: 3372 1551 975 552 426 268 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6405 Fragments arranged by size: 6405 683 56 BtsI GCAGTG_nn' Cuts at: 2877 3105 4660 5454 5474 2877 Size: 228 1555 794 20 4547 Fragments arranged by size: 4547 1555 794 228 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 7144 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2250 2285 4117 4152 529 Size: 35 1686 35 1832 35 3521 Fragments arranged by size: 3521 1832 1686 35 35 35 DraI TTT'AAA Cuts at: 4448 4448 Size: 7144 DraIII CAC_nnn'GTG Cuts at: 3127 3127 Size: 7144 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 6151 809 Size: 507 4835 1802 Fragments arranged by size: 4835 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2037 2469 3012 Size: 54 1425 50 275 18 207 432 543 Cuts at: 3012 3646 4591 5480 7109 8 Size: 634 945 889 1629 43 Fragments arranged by size: 1629 1425 945 889 634 543 432 275 207 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4591 1537 Size: 275 2779 4090 Fragments arranged by size: 4090 2779 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2537 2786 5074 1353 Size: 1184 249 2288 3423 Fragments arranged by size: 3423 2288 1184 249 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3503 3637 5731 6105 6251 387 Size: 1064 138 1914 134 2094 374 146 1280 Fragments arranged by size: 2094 1914 1280 1064 374 146 138 134 EcoICRI GAG'CTC Cuts at: 3061 3406 3061 Size: 345 6799 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2285 2523 2654 2685 3316 4063 4276 Size: 393 653 238 131 31 631 747 213 Cuts at: 4276 5207 5804 6591 6859 1239 Size: 931 597 787 268 1524 Fragments arranged by size: 1524 931 787 747 653 631 597 393 268 238 213 131 31 EcoNI CCTnn'n_nnAGG Cuts at: 2826 2845 2826 Size: 19 7125 EcoO109I rG'GnC_Cy Cuts at: 2121 2691 2121 Size: 570 6574 EcoRI G'AATT_C Cuts at: 2975 3261 4453 4831 2975 Size: 286 1192 378 5288 Fragments arranged by size: 5288 1192 378 286 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2237 2237 Size: 7144 FspI TGC'GCA Cuts at: 5650 5650 Size: 7144 HaeII r_GCGC'y Cuts at: 1678 2863 3523 6291 1678 Size: 1185 660 2768 2531 Fragments arranged by size: 2768 2531 1185 660 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2964 2996 3356 3388 3425 Size: 32 135 32 1392 32 360 32 37 Cuts at: 3425 3457 4198 4230 5785 5817 5859 5891 1373 Size: 32 741 32 1555 32 42 32 2626 Fragments arranged by size: 2626 1555 1392 741 360 135 42 37 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 4488 4734 669 Size: 988 281 2550 246 3079 Fragments arranged by size: 3079 2550 988 281 246 HindIII A'AGCT_T Cuts at: 748 2219 748 Size: 1471 5673 HpaI GTT'AAC Cuts at: 4734 4734 Size: 7144 KasI G'GCGC_C Cuts at: 3519 3519 Size: 7144 KpnI G_GTAC'C Cuts at: 4469 4469 Size: 7144 MfeI C'AATT_G Cuts at: 3658 4743 3658 Size: 1085 6059 MluI A'CGCG_T Cuts at: 7020 7020 Size: 7144 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2187 6258 6442 1305 Size: 882 4071 184 2007 Fragments arranged by size: 4071 2007 882 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2039 2471 3014 10 Size: 54 1425 343 207 432 543 4140 Fragments arranged by size: 4140 1425 543 432 343 207 54 MslI CAynn'nnrTG Cuts at: 518 1166 2465 2594 2598 2733 4331 5102 5461 Size: 648 1299 129 4 135 1598 771 359 Cuts at: 5461 5620 518 Size: 159 2042 Fragments arranged by size: 2042 1598 1299 771 648 359 159 135 129 4 MspA1I CmG'CkG Cuts at: 1606 2360 3429 3535 4348 4354 4560 5237 6385 Size: 754 1069 106 813 6 206 677 1148 Cuts at: 6385 6630 1606 Size: 245 2120 Fragments arranged by size: 2120 1148 1069 813 754 677 245 206 106 6 NaeI GCC'GGC Cuts at: 3518 3518 Size: 7144 NarI GG'CG_CC Cuts at: 3520 3520 Size: 7144 NcoI C'CATG_G Cuts at: 513 1065 2040 2466 4285 513 Size: 552 975 426 1819 3372 Fragments arranged by size: 3372 1819 975 552 426 NdeI CA'TA_TG Cuts at: 387 387 Size: 7144 NgoMIV G'CCGG_C Cuts at: 3516 3516 Size: 7144 NheI G'CTAG_C Cuts at: 1052 1052 Size: 7144 NotI GC'GGCC_GC Cuts at: 4591 4591 Size: 7144 NspI r_CATG'y Cuts at: 1132 1229 2587 2710 4171 4502 6047 1132 Size: 97 1358 123 1461 331 1545 2229 Fragments arranged by size: 2229 1545 1461 1358 331 123 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 7144 PciI A'CATG_T Cuts at: 2583 4167 6043 2583 Size: 1584 1876 3684 Fragments arranged by size: 3684 1876 1584 PflMI CCAn_nnn'nTGG Cuts at: 1108 3127 1108 Size: 2019 5125 PmeI GTTT'AAAC Cuts at: 4448 4448 Size: 7144 PmlI CAC'GTG Cuts at: 3127 3127 Size: 7144 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3476 3508 5213 5245 6726 6758 3476 Size: 32 1705 32 1481 32 3862 Fragments arranged by size: 3862 1705 1481 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2121 2121 Size: 7144 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 7144 PsiI TTA'TAA Cuts at: 4714 4714 Size: 7144 PstI C_TGCA'G Cuts at: 830 3586 3744 4353 4496 830 Size: 2756 158 609 143 3478 Fragments arranged by size: 3478 2756 609 158 143 PvuI CG_AT'CG Cuts at: 2001 3000 2001 Size: 999 6145 PvuII CAG'CTG Cuts at: 3429 3535 4348 4354 3429 Size: 106 813 6 6219 Fragments arranged by size: 6219 813 106 6 SacI G_AGCT'C Cuts at: 3063 3408 3063 Size: 345 6799 SalI G'TCGA_C Cuts at: 1936 4486 1936 Size: 2550 4594 SanDI GG'GwC_CC Cuts at: 2121 2121 Size: 7144 SapI GCTCTTCn'nnn_ Cuts at: 2537 2537 Size: 7144 SbfI CC_TGCA'GG Cuts at: 4496 4496 Size: 7144 ScaI AGT'ACT Cuts at: 5392 7104 5392 Size: 1712 5432 SfcI C'TryA_G Cuts at: 826 1045 3582 3740 3899 4349 4492 5627 6308 Size: 219 2537 158 159 450 143 1135 681 Cuts at: 6308 6499 826 Size: 191 1471 Fragments arranged by size: 2537 1471 1135 681 450 219 191 159 158 143 SfiI GGCCn_nnn'nGGCC Cuts at: 2189 2363 2189 Size: 174 6970 SfoI GGC'GCC Cuts at: 3521 3521 Size: 7144 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 7144 SgrAI Cr'CCGG_yG Cuts at: 1700 3516 1700 Size: 1816 5328 SmaI CCC'GGG Cuts at: 1872 4471 1872 Size: 2599 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2809 5248 6149 6411 820 Size: 197 926 866 2439 901 262 1553 Fragments arranged by size: 2439 1553 926 901 866 262 197 SnaBI TAC'GTA Cuts at: 493 4935 493 Size: 4442 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 7144 SphI G_CATG'C Cuts at: 1132 4502 1132 Size: 3370 3774 SspI AAT'ATT Cuts at: 5 52 5068 5 Size: 47 5016 2081 Fragments arranged by size: 5016 2081 47 StuI AGG'CCT Cuts at: 1517 2192 3368 1517 Size: 675 1176 5293 Fragments arranged by size: 5293 1176 675 StyI C'CwwG_G Cuts at: 513 1065 2040 2466 2493 3168 4285 4583 513 Size: 552 975 426 27 675 1117 298 3074 Fragments arranged by size: 3074 1117 975 675 552 426 298 27 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2600 5171 5188 5341 5526 5971 325 Size: 1255 1020 2571 17 153 185 445 1498 Fragments arranged by size: 2571 1498 1255 1020 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2506 2586 5390 Size: 274 80 33 51 1443 529 80 2804 Cuts at: 5390 7102 96 Size: 1712 138 Fragments arranged by size: 2804 1712 1443 529 274 138 80 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 7104 7136 7104 Size: 32 7112 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 7144 XbaI T'CTAG_A Cuts at: 4480 4480 Size: 7144 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2011 4061 4135 4438 2011 Size: 2050 74 303 4717 Fragments arranged by size: 4717 2050 303 74 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 7144 XmaI C'CCGG_G Cuts at: 1870 4469 1870 Size: 2599 4545 XmnI GAAnn'nnTTC Cuts at: 5273 5273 Size: 7144 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4110 4952 276 Size: 53 83 186 936 2576 842 2468 Fragments arranged by size: 2576 2468 936 842 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SanDI SapI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: ApaI AscI AvrII BfrBI BsiWI BstXI BstZ17I EcoRV FseI FspAI NruI NsiI PacI PfoI PspOMI PspXI PsrI RsrII SacII SexAI SrfI SwaI