FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0556, 251 aa
  1>>>pF1KE0556 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8516+/-0.000745; mu= 12.6528+/- 0.045
 mean_var=81.5229+/-16.090, 0's: 0 Z-trim(111.0): 17  B-trim: 0 in 0/51
 Lambda= 0.142048
 statistics sampled from 12013 (12023) to 12013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.369), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS54220.1 ANGPTL8 gene_id:55908|Hs108|chr19      ( 198) 1274 270.0 8.4e-73


>>CCDS54220.1 ANGPTL8 gene_id:55908|Hs108|chr19           (198 aa)
 initn: 1274 init1: 1274 opt: 1274  Z-score: 1420.5  bits: 270.0 E(32554): 8.4e-73
Smith-Waterman score: 1274; 100.0% identity (100.0% similar) in 198 aa overlap (54-251:1-198)

            30        40        50        60        70        80   
pF1KE0 PVMYCTRTARLRTEPWRLLKLRLLYLRPSVMPVPALCLLWALAMVTRPASAAPMGGPELA
                                     ::::::::::::::::::::::::::::::
CCDS54                               MPVPALCLLWALAMVTRPASAAPMGGPELA
                                             10        20        30

            90       100       110       120       130       140   
pF1KE0 QHEELTLLFHGTLQLGQALNGVYRTTEGRLTKARNSLGLYGRTIELLGQEVSRGRDAAQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QHEELTLLFHGTLQLGQALNGVYRTTEGRLTKARNSLGLYGRTIELLGQEVSRGRDAAQE
               40        50        60        70        80        90

           150       160       170       180       190       200   
pF1KE0 LRASLLETQMEEDILQLQAEATAEVLGEVAQAQKVLRDSVQRLEVQLRSAWLGPAYREFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LRASLLETQMEEDILQLQAEATAEVLGEVAQAQKVLRDSVQRLEVQLRSAWLGPAYREFE
              100       110       120       130       140       150

           210       220       230       240       250 
pF1KE0 VLKAHADKQSHILWALTGHVQRQRREMVAQQHRLRQIQERLHTAALPA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VLKAHADKQSHILWALTGHVQRQRREMVAQQHRLRQIQERLHTAALPA
              160       170       180       190        




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:32:51 2016 done: Wed Nov  2 23:32:51 2016
 Total Scan time:  2.210 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]