Result of FASTA (omim) for
pFN21AB6527
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6527, 365 aa
1>>>pF1KB6527 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4484+/-0.000431; mu= 12.6880+/- 0.026
mean_var=197.1482+/-44.263, 0's: 0 Z-trim(117.7): 367 B-trim: 1560 in 1/49
Lambda= 0.091344
statistics sampled from 29527 (29933) to 29527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.351), width: 16
Scan time: 7.020
The best scores are: opt bits E(85289)
NP_060450 (OMIM: 607908,616827) LIM and senescent ( 365) 2676 365.3 1.2e-100
NP_001154875 (OMIM: 607908,616827) LIM and senesce ( 341) 2489 340.6 3e-93
NP_001129509 (OMIM: 607908,616827) LIM and senesce ( 363) 2488 340.5 3.4e-93
NP_001154876 (OMIM: 607908,616827) LIM and senesce ( 336) 2481 339.6 6.2e-93
NP_001180413 (OMIM: 602567) LIM and senescent cell ( 362) 2204 303.1 6.4e-82
NP_001180411 (OMIM: 602567) LIM and senescent cell ( 329) 2161 297.4 3.1e-80
NP_001180412 (OMIM: 602567) LIM and senescent cell ( 337) 2159 297.1 3.7e-80
NP_001180414 (OMIM: 602567) LIM and senescent cell ( 387) 2159 297.2 4e-80
NP_004978 (OMIM: 602567) LIM and senescent cell an ( 325) 2152 296.2 6.9e-80
NP_001180417 (OMIM: 602567) LIM and senescent cell ( 325) 2152 296.2 6.9e-80
XP_005264005 (OMIM: 602567) PREDICTED: LIM and sen ( 373) 2135 294.0 3.5e-79
XP_005264006 (OMIM: 602567) PREDICTED: LIM and sen ( 348) 2090 288.1 2.1e-77
XP_005264003 (OMIM: 602567) PREDICTED: LIM and sen ( 398) 2090 288.2 2.2e-77
XP_005264008 (OMIM: 602567) PREDICTED: LIM and sen ( 336) 2083 287.1 3.8e-77
XP_005264007 (OMIM: 602567) PREDICTED: LIM and sen ( 336) 2083 287.1 3.8e-77
XP_005263767 (OMIM: 607908,616827) PREDICTED: LIM ( 272) 2004 276.6 4.6e-74
XP_016859581 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 1788 248.2 1.9e-65
XP_016859583 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 1788 248.2 1.9e-65
XP_016859580 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 1788 248.2 1.9e-65
XP_016859582 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 1788 248.2 1.9e-65
XP_006712690 (OMIM: 607908,616827) PREDICTED: LIM ( 225) 1632 227.5 2.4e-59
XP_011509755 (OMIM: 607908,616827) PREDICTED: LIM ( 324) 1455 204.4 3.1e-52
NP_001243471 (OMIM: 607908,616827) LIM and senesce ( 189) 1371 193.0 4.8e-49
XP_006712691 (OMIM: 607908,616827) PREDICTED: LIM ( 190) 1052 150.9 2.2e-36
XP_016859958 (OMIM: 607908,616827) PREDICTED: LIM ( 238) 628 95.2 1.6e-19
NP_001243354 (OMIM: 605904) PDZ and LIM domain pro ( 271) 470 74.4 3.3e-13
XP_011533001 (OMIM: 605903) PREDICTED: PDZ and LIM ( 309) 468 74.3 4.3e-13
NP_001243357 (OMIM: 605904) PDZ and LIM domain pro ( 474) 470 74.8 4.6e-13
NP_001011513 (OMIM: 605904) PDZ and LIM domain pro ( 487) 470 74.8 4.6e-13
XP_005262755 (OMIM: 605904) PREDICTED: PDZ and LIM ( 493) 470 74.8 4.7e-13
XP_011533000 (OMIM: 605903) PREDICTED: PDZ and LIM ( 364) 468 74.4 4.7e-13
XP_016863147 (OMIM: 605904) PREDICTED: PDZ and LIM ( 498) 470 74.8 4.7e-13
NP_976227 (OMIM: 605903) PDZ and LIM domain protei ( 423) 468 74.4 5.1e-13
NP_006448 (OMIM: 605904) PDZ and LIM domain protei ( 596) 470 74.9 5.2e-13
XP_011529845 (OMIM: 605904) PREDICTED: PDZ and LIM ( 600) 470 74.9 5.3e-13
XP_016863146 (OMIM: 605904) PREDICTED: PDZ and LIM ( 602) 470 74.9 5.3e-13
XP_006714133 (OMIM: 605904) PREDICTED: PDZ and LIM ( 605) 470 74.9 5.3e-13
XP_006714132 (OMIM: 605904) PREDICTED: PDZ and LIM ( 607) 470 74.9 5.3e-13
XP_005262753 (OMIM: 605904) PREDICTED: PDZ and LIM ( 619) 470 74.9 5.3e-13
NP_005442 (OMIM: 605903) PDZ and LIM domain protei ( 457) 468 74.5 5.4e-13
NP_001243355 (OMIM: 605904) PDZ and LIM domain pro ( 625) 470 74.9 5.4e-13
XP_006714131 (OMIM: 605904) PREDICTED: PDZ and LIM ( 630) 470 74.9 5.4e-13
XP_005262752 (OMIM: 605904) PREDICTED: PDZ and LIM ( 728) 470 75.0 5.9e-13
XP_005262750 (OMIM: 605904) PREDICTED: PDZ and LIM ( 734) 470 75.0 5.9e-13
XP_006714129 (OMIM: 605904) PREDICTED: PDZ and LIM ( 739) 470 75.0 5.9e-13
NP_001243356 (OMIM: 605904) PDZ and LIM domain pro ( 483) 448 71.9 3.4e-12
NP_001309395 (OMIM: 605126) four and a half LIM do ( 284) 418 67.6 3.9e-11
NP_001164278 (OMIM: 605126) four and a half LIM do ( 284) 418 67.6 3.9e-11
NP_065228 (OMIM: 605126) four and a half LIM domai ( 284) 418 67.6 3.9e-11
NP_001309396 (OMIM: 605126) four and a half LIM do ( 284) 418 67.6 3.9e-11
>>NP_060450 (OMIM: 607908,616827) LIM and senescent cell (365 aa)
initn: 2676 init1: 2676 opt: 2676 Z-score: 1927.9 bits: 365.3 E(85289): 1.2e-100
Smith-Waterman score: 2676; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
310 320 330 340 350 360
pF1KB6 DLNSA
:::::
NP_060 DLNSA
>>NP_001154875 (OMIM: 607908,616827) LIM and senescent c (341 aa)
initn: 2488 init1: 2488 opt: 2489 Z-score: 1795.0 bits: 340.6 E(85289): 3e-93
Smith-Waterman score: 2489; 99.7% identity (99.7% similar) in 340 aa overlap (27-365:2-341)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATG-NMSDALANAVCQRCQARFSPAERIVNSNGEL
:: :::::::::::::::::::::::::::::::
NP_001 MTGSNMSDALANAVCQRCQARFSPAERIVNSNGEL
10 20 30
60 70 80 90 100 110
pF1KB6 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB6 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
280 290 300 310 320 330
360
pF1KB6 TDLNSA
::::::
NP_001 TDLNSA
340
>>NP_001129509 (OMIM: 607908,616827) LIM and senescent c (363 aa)
initn: 2488 init1: 2488 opt: 2488 Z-score: 1794.0 bits: 340.5 E(85289): 3.4e-93
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 337 aa overlap (29-365:27-363)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::::::::::::::::::::::::::::::::
NP_001 MTGRKRKWGETGTGSGAAPAAALRWSNMSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
300 310 320 330 340 350
pF1KB6 DLNSA
:::::
NP_001 DLNSA
360
>>NP_001154876 (OMIM: 607908,616827) LIM and senescent c (336 aa)
initn: 2481 init1: 2481 opt: 2481 Z-score: 1789.4 bits: 339.6 E(85289): 6.2e-93
Smith-Waterman score: 2481; 100.0% identity (100.0% similar) in 336 aa overlap (30-365:1-336)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
:::::::::::::::::::::::::::::::
NP_001 MSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
280 290 300 310 320 330
pF1KB6 DLNSA
:::::
NP_001 DLNSA
>>NP_001180413 (OMIM: 602567) LIM and senescent cell ant (362 aa)
initn: 2165 init1: 2165 opt: 2204 Z-score: 1591.8 bits: 303.1 E(85289): 6.4e-82
Smith-Waterman score: 2204; 80.8% identity (92.5% similar) in 360 aa overlap (2-354:3-362)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQS-------PPPATGNMSDALANAVCQRCQARFSPAERI
: .: :. :::::::. : . : .::..:::.:.:.::.. :.:::.:
NP_001 MTALQLKELSHSGLYRRRRDRPDSLRVNGLPEEELSNMANALASATCERCKGGFAPAEKI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 VNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVI
::::::::::.::::::::. ::::::::::::::::::::::::::: .::::::::::
NP_001 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 KAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVID
:::::.::: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::
NP_001 KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIID
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EQPLMFRSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGR
::::.:..: ::::::::..:::::::.::::::::::::::::::::::::::::::::
NP_001 EQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDV
::::.:::::::::::::::::::::::::.::::::::::::::::::..:..::::::
NP_001 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 VSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTS
::::::::::.::.:::::.::::::::::::::::::.::::::::::::::::.: .
NP_001 VSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLG
310 320 330 340 350 360
360
pF1KB6 RKAQPKATDLNSA
::
NP_001 RK
>>NP_001180411 (OMIM: 602567) LIM and senescent cell ant (329 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1561.6 bits: 297.4 E(85289): 3.1e-80
Smith-Waterman score: 2161; 85.4% identity (96.6% similar) in 328 aa overlap (27-354:2-329)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
: ::..:::.:.:.::.. :.:::.:::::::::
NP_001 MTCNMANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
NP_001 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
NP_001 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
NP_001 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
NP_001 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
NP_001 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
280 290 300 310 320
pF1KB6 DLNSA
>>NP_001180412 (OMIM: 602567) LIM and senescent cell ant (337 aa)
initn: 2159 init1: 2159 opt: 2159 Z-score: 1560.0 bits: 297.1 E(85289): 3.7e-80
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:12-337)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::..:::.:.:.::.. :.:::.:::::::::
NP_001 MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30 40
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
NP_001 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
NP_001 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
NP_001 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
NP_001 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
NP_001 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
290 300 310 320 330
pF1KB6 DLNSA
>>NP_001180414 (OMIM: 602567) LIM and senescent cell ant (387 aa)
initn: 2159 init1: 2159 opt: 2159 Z-score: 1559.4 bits: 297.2 E(85289): 4e-80
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:62-387)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGE
::..:::.:.:.::.. :.:::.:::::::
NP_001 TEDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGE
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB6 LYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNN
::::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.
NP_001 LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNS
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB6 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMF
::: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:
NP_001 WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIF
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB6 RSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALG
..: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:
NP_001 KNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMG
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB6 KQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNK
::::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::
NP_001 KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNK
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB6 AWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPK
::::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
NP_001 AWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
340 350 360 370 380
360
pF1KB6 ATDLNSA
>>NP_004978 (OMIM: 602567) LIM and senescent cell antige (325 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1555.2 bits: 296.2 E(85289): 6.9e-80
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (30-354:1-325)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
:..:::.:.:.::.. :.:::.:::::::::
NP_004 MANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
NP_004 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
NP_004 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
NP_004 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
NP_004 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
NP_004 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
280 290 300 310 320
pF1KB6 DLNSA
>>NP_001180417 (OMIM: 602567) LIM and senescent cell ant (325 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1555.2 bits: 296.2 E(85289): 6.9e-80
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (30-354:1-325)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
:..:::.:.:.::.. :.:::.:::::::::
NP_001 MANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
NP_001 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
NP_001 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
NP_001 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
NP_001 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
NP_001 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
280 290 300 310 320
pF1KB6 DLNSA
365 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:14:00 2016 done: Fri Nov 4 23:14:01 2016
Total Scan time: 7.020 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]