Result of FASTA (ccds) for
pFN21AB6473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6473, 325 aa
1>>>pF1KB6473 325 - 325 aa - 325 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1882+/-0.00119; mu= 2.3737+/- 0.069
mean_var=208.9802+/-49.852, 0's: 0 Z-trim(109.1): 116 B-trim: 1000 in 2/49
Lambda= 0.088720
statistics sampled from 10532 (10653) to 10532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.327), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2 ( 325) 2418 322.3 3.4e-88
CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2 ( 329) 2418 322.3 3.4e-88
CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2 ( 337) 2418 322.3 3.4e-88
CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2 ( 362) 2418 322.3 3.6e-88
CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2 ( 387) 2418 322.3 3.8e-88
CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2 ( 336) 2152 288.2 6.1e-78
CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2 ( 341) 2152 288.2 6.2e-78
CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2 ( 363) 2152 288.3 6.5e-78
CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2 ( 365) 2152 288.3 6.5e-78
CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2 ( 189) 1201 166.3 1.8e-41
CCDS76407.1 LPXN gene_id:9404|Hs108|chr11 ( 366) 514 78.6 8.4e-15
CCDS7969.1 LPXN gene_id:9404|Hs108|chr11 ( 386) 514 78.6 8.8e-15
CCDS53635.1 LPXN gene_id:9404|Hs108|chr11 ( 391) 514 78.6 8.8e-15
CCDS75166.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 271) 462 71.8 6.8e-13
CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5 ( 423) 462 72.0 9.4e-13
CCDS4422.1 PDLIM7 gene_id:9260|Hs108|chr5 ( 457) 462 72.0 1e-12
CCDS47102.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 487) 462 72.1 1e-12
CCDS3641.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 596) 462 72.1 1.2e-12
CCDS58916.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 625) 462 72.2 1.3e-12
CCDS30678.1 FHL3 gene_id:2275|Hs108|chr1 ( 280) 455 70.9 1.3e-12
CCDS58917.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 483) 437 68.9 9.6e-12
CCDS10713.1 TGFB1I1 gene_id:7041|Hs108|chr16 ( 444) 414 65.9 6.9e-11
>>CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2 (325 aa)
initn: 2418 init1: 2418 opt: 2418 Z-score: 1697.0 bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
250 260 270 280 290 300
310 320
pF1KB6 KKCYEKFPLELKKRLKKLAETLGRK
:::::::::::::::::::::::::
CCDS20 KKCYEKFPLELKKRLKKLAETLGRK
310 320
>>CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2 (329 aa)
initn: 2418 init1: 2418 opt: 2418 Z-score: 1696.9 bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:5-329)
10 20 30 40 50
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MTCNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 LCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 LAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDM
250 260 270 280 290 300
300 310 320
pF1KB6 KPVCKKCYEKFPLELKKRLKKLAETLGRK
:::::::::::::::::::::::::::::
CCDS54 KPVCKKCYEKFPLELKKRLKKLAETLGRK
310 320
>>CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2 (337 aa)
initn: 2418 init1: 2418 opt: 2418 Z-score: 1696.7 bits: 322.3 E(32554): 3.4e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:13-337)
10 20 30 40
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 LFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 FVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 TADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 HRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLK
250 260 270 280 290 300
290 300 310 320
pF1KB6 NKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
:::::::::::::::::::::::::::::::::::::
CCDS54 NKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
310 320 330
>>CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2 (362 aa)
initn: 2418 init1: 2418 opt: 2418 Z-score: 1696.3 bits: 322.3 E(32554): 3.6e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:38-362)
10 20 30
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGEL
::::::::::::::::::::::::::::::
CCDS54 ELSHSGLYRRRRDRPDSLRVNGLPEEELSNMANALASATCERCKGGFAPAEKIVNSNGEL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
250 260 270 280 290 300
280 290 300 310 320
pF1KB6 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
310 320 330 340 350 360
>>CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2 (387 aa)
initn: 2418 init1: 2418 opt: 2418 Z-score: 1696.0 bits: 322.3 E(32554): 3.8e-88
Smith-Waterman score: 2418; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:63-387)
10 20 30
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGEL
::::::::::::::::::::::::::::::
CCDS54 EDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGEL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSW
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFK
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGK
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKA
280 290 300 310 320 330
280 290 300 310 320
pF1KB6 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
340 350 360 370 380
>>CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2 (336 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1512.8 bits: 288.2 E(32554): 6.1e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE
:..:::.:.:.::.. :.:::.:::::::::::.::::::::. ::::::::::::::::
CCDS54 MSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP
::::::::::: .:::::::::::::::.::: ::::.::. :::.:::::::::::::
CCDS54 HDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY
:::::::.::::::::.:: .::::::.:..: ::::::::..:::::::.:::::::::
CCDS54 CHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEARELKGELY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC
:::::::::::::::::::::::::::.:::::::::::::::::::::::::.::::::
CCDS54 CLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVC
::::::::::::..:..::::::::::::::::.::.:::::.:::::::::::::::::
CCDS54 ETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMKPVC
250 260 270 280 290 300
310 320
pF1KB6 KKCYEKFPLELKKRLKKLAETLGRK
:.::::::::::::::::.: .::
CCDS54 KRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
310 320 330
>>CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2 (341 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1512.7 bits: 288.2 E(32554): 6.2e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:6-330)
10 20 30 40 50
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG
:..:::.:.:.::.. :.:::.:::::::::::.::::::::. :::::::::::
CCDS54 MTGSNMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGR
:::::::::::::::: .:::::::::::::::.::: ::::.::. :::.::::::::
CCDS54 RKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAREL
::::::::::::.::::::::.:: .::::::.:..: ::::::::..:::::::.::::
CCDS54 HLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEAREL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 KGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::.:
CCDS54 KGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 GLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFD
:::::::::::::::::..:..::::::::::::::::.::.:::::.::::::::::::
CCDS54 GLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFD
250 260 270 280 290 300
300 310 320
pF1KB6 MKPVCKKCYEKFPLELKKRLKKLAETLGRK
::::::.::::::::::::::::.: .::
CCDS54 MKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
310 320 330 340
>>CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2 (363 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1512.3 bits: 288.3 E(32554): 6.5e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:28-352)
10 20 30
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELYHE
:..:::.:.:.::.. :.:::.:::::::::::
CCDS54 MTGRKRKWGETGTGSGAAPAAALRWSNMSDALANAVCQRCQARFSPAERIVNSNGELYHE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPE
.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.:::
CCDS54 HCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDP
::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..:
CCDS54 CFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 YHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWH
::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::::
CCDS54 YHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCV
::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::::
CCDS54 VEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCV
250 260 270 280 290 300
280 290 300 310 320
pF1KB6 NCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS54 SCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDL
310 320 330 340 350 360
CCDS54 NSA
>>CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2 (365 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1512.3 bits: 288.3 E(32554): 6.5e-78
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (1-325:30-354)
10 20 30
pF1KB6 MANALASATCERCKGGFAPAEKIVNSNGELY
:..:::.:.:.::.. :.:::.:::::::::
CCDS21 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS21 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS21 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS21 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS21 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
250 260 270 280 290 300
280 290 300 310 320
pF1KB6 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS21 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
310 320 330 340 350 360
CCDS21 DLNSA
>>CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2 (189 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 858.2 bits: 166.3 E(32554): 1.8e-41
Smith-Waterman score: 1201; 88.2% identity (98.3% similar) in 178 aa overlap (148-325:1-178)
120 130 140 150 160 170
pF1KB6 CRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKG
.:..: ::::::::..:::::::.::::::
CCDS58 MFRSDAYHPDHFNCTHCGKELTAEARELKG
10 20 30
180 190 200 210 220 230
pF1KB6 ELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGL
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::.:::
CCDS58 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 AYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMK
:::::::::::::::..:..::::::::::::::::.::.:::::.::::::::::::::
CCDS58 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
100 110 120 130 140 150
300 310 320
pF1KB6 PVCKKCYEKFPLELKKRLKKLAETLGRK
::::.::::::::::::::::.: .::
CCDS58 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
160 170 180
325 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:06:00 2016 done: Fri Nov 4 23:06:01 2016
Total Scan time: 2.030 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]