FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3681, 363 aa 1>>>pF1KE3681 363 - 363 aa - 363 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6822+/-0.000317; mu= 20.0969+/- 0.020 mean_var=191.8192+/-40.908, 0's: 0 Z-trim(122.2): 385 B-trim: 2162 in 1/53 Lambda= 0.092604 statistics sampled from 39348 (39832) to 39348 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.467), width: 16 Scan time: 8.220 The best scores are: opt bits E(85289) NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 2530 349.8 5.7e-96 NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 392) 2530 349.8 5.9e-96 XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobo ( 378) 2252 312.7 8.8e-85 XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobo ( 407) 2252 312.7 9.2e-85 NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 2246 311.8 1.5e-84 NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 2246 311.9 1.5e-84 XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobo ( 230) 1396 198.0 1.8e-50 XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 1368 194.5 3.1e-49 XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 1368 194.5 3.1e-49 NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 1361 193.6 5.7e-49 NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 1361 193.6 5.8e-49 NP_001229264 (OMIM: 608215) LIM/homeobox protein L ( 176) 1208 172.7 5.7e-43 NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 475 75.3 2.6e-13 XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 471 74.7 3.8e-13 XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 469 74.5 4.5e-13 NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 469 74.5 4.6e-13 XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 451 71.9 2.2e-12 NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 445 71.3 4.3e-12 XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 436 70.0 9e-12 NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 437 70.2 9e-12 XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 436 70.1 9.5e-12 NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 436 70.1 9.7e-12 NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 436 70.1 9.8e-12 XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 436 70.1 9.9e-12 NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 428 69.0 2e-11 NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 415 67.2 6.4e-11 NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 411 66.7 9.4e-11 XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 411 67.0 1.2e-10 XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 392 64.0 4.8e-10 NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 392 64.2 5.6e-10 NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 392 64.2 5.6e-10 NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 391 64.1 6.3e-10 NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 391 64.1 6.4e-10 NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 391 64.1 6.4e-10 NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 382 62.3 9.2e-10 XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 382 62.3 9.2e-10 XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 349 57.8 1.8e-08 XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 349 57.8 1.8e-08 NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 349 57.8 1.9e-08 NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 349 57.8 1.9e-08 XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 349 58.0 2.1e-08 XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 334 55.8 7.3e-08 NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 334 55.8 7.3e-08 XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 334 55.8 7.3e-08 XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 334 55.8 7.3e-08 NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 334 55.8 7.3e-08 XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 334 55.8 7.3e-08 NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 334 55.8 7.3e-08 NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 334 55.8 7.3e-08 NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 334 55.8 7.6e-08 >>NP_001229263 (OMIM: 608215) LIM/homeobox protein Lhx6 (363 aa) initn: 2530 init1: 2530 opt: 2530 Z-score: 1844.0 bits: 349.8 E(85289): 5.7e-96 Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL 310 320 330 340 350 360 pF1KE3 FQY ::: NP_001 FQY >>NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (392 aa) initn: 2530 init1: 2530 opt: 2530 Z-score: 1843.7 bits: 349.8 E(85289): 5.9e-96 Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:30-392) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: NP_055 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH 310 320 330 340 350 360 340 350 360 pF1KE3 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY :::::::::::::::::::::::::::::::: NP_055 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY 370 380 390 >>XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobox pr (378 aa) initn: 2262 init1: 2239 opt: 2252 Z-score: 1643.1 bits: 312.7 E(85289): 8.8e-85 Smith-Waterman score: 2252; 90.7% identity (93.7% similar) in 365 aa overlap (1-357:1-362) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 IHYTPFSSPERARMVTLHGYIESQVQ--------CGQVHCRLPYTAPPVHLKADMDGPLS ::::::::::::::::::::::.... ::.. .: :: :. : . XP_011 IHYTPFSSPERARMVTLHGYIETNARLLAGMCDWCGHLIWQLQRIIPPQSLHY---GAAN 310 320 330 340 350 360 pF1KE3 NRGEKVILFQY : ..: XP_011 NTADKAWMSPRASLQVIITFR 360 370 >>XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobox pr (407 aa) initn: 2262 init1: 2239 opt: 2252 Z-score: 1642.8 bits: 312.7 E(85289): 9.2e-85 Smith-Waterman score: 2252; 90.7% identity (93.7% similar) in 365 aa overlap (1-357:30-391) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: XP_011 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR 250 260 270 280 290 300 280 290 300 310 320 pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQ----- :::::::::::::::::::::::::::::::::::::::::::::::::::.... XP_011 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIETNARLLAGM 310 320 330 340 350 360 330 340 350 360 pF1KE3 ---CGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY ::.. .: :: :. : .: ..: XP_011 CDWCGHLIWQLQRIIPPQSLHY---GAANNTADKAWMSPRASLQVIITFR 370 380 390 400 >>NP_001229262 (OMIM: 608215) LIM/homeobox protein Lhx6 (366 aa) initn: 2242 init1: 2242 opt: 2246 Z-score: 1638.9 bits: 311.8 E(85289): 1.5e-84 Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:19-364) 10 20 30 40 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA :::::::::::::::::::::::::::::::::::::::::: NP_001 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE3 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP 250 260 270 280 290 300 290 300 310 320 330 pF1KE3 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCGQVHCRLPYTAP :::::::::::::::::::::::::::::::::::::::::. : . .:: :: NP_001 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTLPALPHLPVGAP 310 320 330 340 350 360 340 350 360 pF1KE3 PVHLKADMDGPLSNRGEKVILFQY . : NP_001 QLPLSR >>NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (377 aa) initn: 2242 init1: 2242 opt: 2246 Z-score: 1638.8 bits: 311.9 E(85289): 1.5e-84 Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:30-375) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: NP_954 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_954 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR 250 260 270 280 290 300 280 290 300 310 320 pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCG ::::::::::::::::::::::::::::::::::::::::::::::::::::. : NP_954 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL 310 320 330 340 350 360 330 340 350 360 pF1KE3 QVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY . .:: :: . : NP_954 PALPHLPVGAPQLPLSR 370 >>XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobox pr (230 aa) initn: 1396 init1: 1396 opt: 1396 Z-score: 1027.1 bits: 198.0 E(85289): 1.8e-50 Smith-Waterman score: 1396; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:30-228) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: XP_005 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGCH 190 200 210 220 230 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR >>XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa) initn: 1330 init1: 881 opt: 1368 Z-score: 1005.0 bits: 194.5 E(85289): 3.1e-49 Smith-Waterman score: 1368; 61.7% identity (80.8% similar) in 334 aa overlap (8-335:5-332) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS : :: : . . .. . :: :.: . : .: .:: :: : :: XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-SSPRSMAS 10 20 30 40 50 70 80 90 100 110 pF1KE3 -SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFC : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::::.:.::: XP_016 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFC 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKV :.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::.:::::: XP_016 KLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQLQVMQAQF :::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.::::::::: XP_016 LCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGAPPSRLPS :::::::::::::::. :::::::::::::::::::::: .:.: .: ...::::: XP_016 AQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPSRLSP 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 ALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNR . ... :. . :. . :.: ::.:... . :: .:: XP_016 PMLEEMAYSAYV-PQDGTMLTALHSYMDDT--HAAVHIHLPGRMWRFQGYSNNGSSSGST 300 310 320 330 340 350 360 pF1KE3 GEKVILFQY XP_016 LICKYNENIFLF 360 >>XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa) initn: 1330 init1: 881 opt: 1368 Z-score: 1005.0 bits: 194.5 E(85289): 3.1e-49 Smith-Waterman score: 1368; 61.7% identity (80.8% similar) in 334 aa overlap (8-335:5-332) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS : :: : . . .. . :: :.: . : .: .:: :: : :: XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-SSPRSMAS 10 20 30 40 50 70 80 90 100 110 pF1KE3 -SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFC : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::::.:.::: XP_016 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFC 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKV :.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::.:::::: XP_016 KLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQLQVMQAQF :::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.::::::::: XP_016 LCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGAPPSRLPS :::::::::::::::. :::::::::::::::::::::: .:.: .: ...::::: XP_016 AQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPSRLSP 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 ALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNR . ... :. . :. . :.: ::.:... . :: .:: XP_016 PMLEEMAYSAYV-PQDGTMLTALHSYMDDT--HAAVHIHLPGRMWRFQGYSNNGSSSGST 300 310 320 330 340 350 360 pF1KE3 GEKVILFQY XP_016 LICKYNENIFLF 360 >>NP_001243043 (OMIM: 604425) LIM/homeobox protein Lhx8 (346 aa) initn: 1332 init1: 881 opt: 1361 Z-score: 1000.1 bits: 193.6 E(85289): 5.7e-49 Smith-Waterman score: 1361; 62.5% identity (82.0% similar) in 323 aa overlap (8-324:5-323) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS : :: : . . .. . :: :.: . : .: .:: :: : :: NP_001 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-SSPRSMAS 10 20 30 40 50 70 80 90 100 110 pF1KE3 -SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFC : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::::.:.::: NP_001 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFC 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKV :.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::.:::::: NP_001 KLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQLQVMQAQF :::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.::::::::: NP_001 LCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGAPPSRLPS :::::::::::::::. :::::::::::::::::::::: .:.: .: ...::::: NP_001 AQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPSRLSP 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 ALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNR . ... :. . :. . :.: ::.:.... NP_001 PMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT 300 310 320 330 340 363 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:10:12 2016 done: Mon Nov 7 16:10:14 2016 Total Scan time: 8.220 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]