FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3681, 363 aa 1>>>pF1KE3681 363 - 363 aa - 363 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2440+/-0.000822; mu= 17.1279+/- 0.051 mean_var=201.1204+/-43.320, 0's: 0 Z-trim(114.6): 155 B-trim: 0 in 0/51 Lambda= 0.090437 statistics sampled from 14961 (15137) to 14961 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.465), width: 16 Scan time: 3.210 The best scores are: opt bits E(32554) CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 2530 342.0 4.8e-94 CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 2530 342.1 5e-94 CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 2246 305.0 6.8e-83 CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 2246 305.0 7e-83 CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 1361 189.5 3.8e-48 CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 1361 189.5 3.9e-48 CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 ( 176) 1208 169.1 2.7e-42 CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 475 73.9 2.6e-13 CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 469 73.2 4.5e-13 CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 445 70.0 4e-12 CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 437 69.0 8.1e-12 CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 436 68.8 8.7e-12 CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 436 68.9 8.8e-12 CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 428 67.8 1.8e-11 CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 415 66.0 5.5e-11 CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 411 65.5 8e-11 >>CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 (363 aa) initn: 2530 init1: 2530 opt: 2530 Z-score: 1801.9 bits: 342.0 E(32554): 4.8e-94 Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 IHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVIL 310 320 330 340 350 360 pF1KE3 FQY ::: CCDS56 FQY >>CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 (392 aa) initn: 2530 init1: 2530 opt: 2530 Z-score: 1801.6 bits: 342.1 E(32554): 5e-94 Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:30-392) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: CCDS68 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH 310 320 330 340 350 360 340 350 360 pF1KE3 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY :::::::::::::::::::::::::::::::: CCDS68 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY 370 380 390 >>CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 (366 aa) initn: 2242 init1: 2242 opt: 2246 Z-score: 1601.6 bits: 305.0 E(32554): 6.8e-83 Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:19-364) 10 20 30 40 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA :::::::::::::::::::::::::::::::::::::::::: CCDS56 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSC 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 KRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRA 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE3 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHP 250 260 270 280 290 300 290 300 310 320 330 pF1KE3 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCGQVHCRLPYTAP :::::::::::::::::::::::::::::::::::::::::. : . .:: :: CCDS56 VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTLPALPHLPVGAP 310 320 330 340 350 360 340 350 360 pF1KE3 PVHLKADMDGPLSNRGEKVILFQY . : CCDS56 QLPLSR >>CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 (377 aa) initn: 2242 init1: 2242 opt: 2246 Z-score: 1601.5 bits: 305.0 E(32554): 7e-83 Smith-Waterman score: 2246; 95.1% identity (96.2% similar) in 346 aa overlap (1-343:30-375) 10 20 30 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEAL ::::::::::::::::::::::::::::::: CCDS68 MYWKHENAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 AGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWH 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 VRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE3 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 YHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE3 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 QDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCR 250 260 270 280 290 300 280 290 300 310 320 pF1KE3 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQ---VQCG ::::::::::::::::::::::::::::::::::::::::::::::::::::. : CCDS68 ARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL 310 320 330 340 350 360 330 340 350 360 pF1KE3 QVHCRLPYTAPPVHLKADMDGPLSNRGEKVILFQY . .:: :: . : CCDS68 PALPHLPVGAPQLPLSR 370 >>CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 (346 aa) initn: 1332 init1: 881 opt: 1361 Z-score: 977.8 bits: 189.5 E(32554): 3.8e-48 Smith-Waterman score: 1361; 62.5% identity (82.0% similar) in 323 aa overlap (8-324:5-323) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS : :: : . . .. . :: :.: . : .: .:: :: : :: CCDS58 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-SSPRSMAS 10 20 30 40 50 70 80 90 100 110 pF1KE3 -SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFC : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::::.:.::: CCDS58 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFC 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKV :.::: :.::.:.::::.:...::::::.::.:::::::::::::::::::::.:::::: CCDS58 KLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQLQVMQAQF :::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.::::::::: CCDS58 LCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGAPPSRLPS :::::::::::::::. :::::::::::::::::::::: .:.: .: ...::::: CCDS58 AQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPSRLSP 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 ALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNR . ... :. . :. . :.: ::.:.... CCDS58 PMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT 300 310 320 330 340 >>CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 (356 aa) initn: 1332 init1: 881 opt: 1361 Z-score: 977.7 bits: 189.5 E(32554): 3.9e-48 Smith-Waterman score: 1361; 62.5% identity (82.0% similar) in 323 aa overlap (8-324:15-333) 10 20 30 40 50 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVC : :: : . . .. . :: :.: . : .: .:: CCDS30 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDED--SCSSSAPLSPS-S 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 SPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYI :: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::: CCDS30 SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEF :.:.::::.::: :.::.:.::::.:...::::::.::.::::::::::::::::::::: CCDS30 KDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 GLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQL .:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.:: CCDS30 ALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQL 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 QVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSGA ::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: ... CCDS30 QVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAV 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 PPSRLPSALSDDIHYTPFSSPERARMVT-LHGYIESQVQCGQVHCRLPYTAPPVHLKADM ::::: . ... :. . :. . :.: ::.:.... CCDS30 PPSRLSPPMLEEMAYSAYV-PQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT 300 310 320 330 340 350 350 360 pF1KE3 DGPLSNRGEKVILFQY >>CCDS59144.1 LHX6 gene_id:26468|Hs108|chr9 (176 aa) initn: 1208 init1: 1208 opt: 1208 Z-score: 872.9 bits: 169.1 E(32554): 2.7e-42 Smith-Waterman score: 1208; 100.0% identity (100.0% similar) in 176 aa overlap (188-363:1-176) 160 170 180 190 200 210 pF1KE3 ACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPK :::::::::::::::::::::::::::::: CCDS59 MIENLKRAAENGNGLTLEGAVPSEQDSQPK 10 20 30 220 230 240 250 260 270 pF1KE3 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE3 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT 100 110 120 130 140 150 340 350 360 pF1KE3 APPVHLKADMDGPLSNRGEKVILFQY :::::::::::::::::::::::::: CCDS59 APPVHLKADMDGPLSNRGEKVILFQY 160 170 >>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa) initn: 603 init1: 274 opt: 475 Z-score: 352.5 bits: 73.9 E(32554): 2.6e-13 Smith-Waterman score: 551; 36.8% identity (65.6% similar) in 247 aa overlap (31-276:3-214) 10 20 30 40 50 60 pF1KE3 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAAS : .:..:... :.. .::. ... CCDS69 MLLETGLERDRAR-----PGAAAVCTL-GGTR 10 20 70 80 90 100 110 120 pF1KE3 SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCK .: .:..: .::::..::. . :: .::.:: :.: : .. :. ... ..:: CCDS69 EIP-----LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCK 30 40 50 60 70 130 140 150 160 170 pF1KE3 MDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KV :.:.::::::: : : .. ::::. .::: :::: :::::.::.:: :.:. .. CCDS69 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRL 80 90 100 110 120 130 180 190 200 210 220 230 pF1KE3 LCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFA .:. :.: . : :: ::: ::..::.::..... . CCDS69 VCKADYETAKQ---REAEA-------------------TAKRPRTTITAKQLETLKSAYN 140 150 160 170 240 250 260 270 280 290 pF1KE3 QDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSD . .: .. ..:.. :::. ::.:::::: ::..:. CCDS69 TSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGG 180 190 200 210 220 230 300 310 320 330 340 350 pF1KE3 DIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRGEKVI CCDS69 SKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEH 240 250 260 270 280 290 >>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa) initn: 603 init1: 274 opt: 469 Z-score: 348.2 bits: 73.2 E(32554): 4.5e-13 Smith-Waterman score: 544; 40.2% identity (67.5% similar) in 209 aa overlap (69-276:35-219) 40 50 60 70 80 90 pF1KE3 EGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECS .:..: .::::..::. . :: .::.:: CCDS69 GELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE3 VCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFA :.: : .. :. ... ..:: :.:.::::::: : : .. ::::. .::: ::: CCDS69 DCHTPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFA 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE3 CFSCKRQLSTGEEFGLVEE-KVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPK : :::::.::.:: :.:. ...:. :.: .: :: CCDS69 CVVCKRQLATGDEFYLMEDSRLVCKADYETA---KQREAEA------------------- 130 140 150 160 220 230 240 250 260 270 pF1KE3 PAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH ::: ::..::.::..... . . .: .. ..:.. :::. ::.:::::: ::..:. CCDS69 TAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL 170 180 190 200 210 220 280 290 300 310 320 330 pF1KE3 TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYT CCDS69 KKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGS 230 240 250 260 270 280 >>CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 (406 aa) initn: 538 init1: 250 opt: 445 Z-score: 331.2 bits: 70.0 E(32554): 4e-12 Smith-Waterman score: 542; 38.1% identity (66.1% similar) in 236 aa overlap (70-276:4-237) 40 50 60 70 80 90 pF1KE3 GQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSV :..: ::::.::.: . :::.:..: CCDS11 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCE 10 20 30 100 110 120 130 140 150 pF1KE3 CRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFAC :. .: .. :. .. ...:: :.: :::::: :.. : :: :::::....:: ::.: CCDS11 CKCNLTEK--CFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTC 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 FSCKRQLSTGEEFGLVEE-KVLCRIHY--DTMI--ENLKRAAENGN--GLTLEGAVPS-- . :..:::::::. ...: : .:. : .. . :: ..: .:. .:. .. :: CCDS11 MMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQD 100 110 120 130 140 150 220 230 240 250 pF1KE3 ------------------EQDSQPKPAKR--ARTSFTAEQLQVMQAQFAQDNNPDAQTLQ :.:.: ::: ::.. :.::....: :: .: . . CCDS11 DAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRE 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE3 KLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPE .::. :::. ::::::::: :..... CCDS11 QLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELI 220 230 240 250 260 270 363 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:10:11 2016 done: Mon Nov 7 16:10:12 2016 Total Scan time: 3.210 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]