FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6102, 105 aa
  1>>>pF1KE6102 105 - 105 aa - 105 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4961+/-0.000243; mu= 8.9968+/- 0.015
 mean_var=69.1866+/-14.166, 0's: 0 Z-trim(121.5): 4  B-trim: 2023 in 2/53
 Lambda= 0.154192
 statistics sampled from 38152 (38156) to 38152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.447), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(85289)
NP_112177 (OMIM: 611763) protein LBH [Homo sapiens ( 105)  720 167.9 2.7e-42
XP_016860548 (OMIM: 611763) PREDICTED: protein LBH ( 222)  649 152.3 2.9e-37


>>NP_112177 (OMIM: 611763) protein LBH [Homo sapiens]     (105 aa)
 initn: 720 init1: 720 opt: 720  Z-score: 880.3  bits: 167.9 E(85289): 2.7e-42
Smith-Waterman score: 720; 99.0% identity (99.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KE6 MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRRCKLKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_112 MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDR
               10        20        30        40        50        60

               70        80        90       100     
pF1KE6 LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_112 LPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETAKENKEQ
               70        80        90       100     

>>XP_016860548 (OMIM: 611763) PREDICTED: protein LBH iso  (222 aa)
 initn: 649 init1: 649 opt: 649  Z-score: 790.0  bits: 152.3 E(85289): 2.9e-37
Smith-Waterman score: 649; 99.0% identity (99.0% similar) in 96 aa overlap (10-105:127-222)

                                    10        20        30         
pF1KE6                      MSIYFPIHCPDYLRSAKMTEVMMNTQPMEEIGLSPRKDG
                                     ::::::::::::::::::::::::::::::
XP_016 DAHWWGPGLGGAAFAVLKGKEPGPGAGRRSPDYLRSAKMTEVMMNTQPMEEIGLSPRKDG
        100       110       120       130       140       150      

      40        50        60        70        80        90         
pF1KE6 LSYQIFPDPSDFDRRCKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSYQIFPDPSDFDRCCKLKDRLPSIVVEPTEGEVESGELRWPPEEFLVQEDEQDNCEETA
        160       170       180       190       200       210      

     100     
pF1KE6 KENKEQ
       ::::::
XP_016 KENKEQ
        220  




105 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:28:16 2016 done: Tue Nov  8 09:28:17 2016
 Total Scan time:  3.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]