Result of FASTA (ccds) for
pFN21AE0565
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0565, 238 aa
1>>>pF1KE0565 238 - 238 aa - 238 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4673+/-0.00152; mu= 8.9048+/- 0.093
mean_var=343.5901+/-66.775, 0's: 0 Z-trim(110.9): 162 B-trim: 28 in 1/49
Lambda= 0.069192
statistics sampled from 11792 (11947) to 11792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.367), width: 16
Scan time: 1.960
The best scores are: opt bits E(32554)
CCDS41591.1 3 gene_id:387266|Hs108|chr11 ( 238) 2071 219.8 1.2e-57
CCDS41592.1 5 gene_id:439915|Hs108|chr11 ( 237) 1334 146.3 1.7e-35
CCDS41684.1 10 gene_id:387273|Hs108|chr11 ( 202) 1270 139.8 1.3e-33
CCDS41683.1 8 gene_id:57830|Hs108|chr11 ( 187) 1103 123.0 1.3e-28
CCDS41682.1 7 gene_id:440050|Hs108|chr11 ( 165) 1049 117.6 5.2e-27
CCDS31330.1 1 gene_id:387264|Hs108|chr11 ( 278) 1021 115.1 4.7e-26
CCDS53677.1 9 gene_id:3846|Hs108|chr11 ( 169) 849 97.6 5.4e-21
CCDS41685.1 11 gene_id:440051|Hs108|chr11 ( 156) 848 97.5 5.6e-21
CCDS31331.1 2 gene_id:440021|Hs108|chr11 ( 177) 816 94.3 5.4e-20
CCDS31332.1 6 gene_id:440023|Hs108|chr11 ( 129) 754 87.9 3.4e-18
CCDS45675.1 11 gene_id:653240|Hs108|chr17 ( 195) 654 78.2 4.2e-15
CCDS54124.1 9 gene_id:100132386|Hs108|chr17 ( 210) 649 77.8 6.2e-15
CCDS32650.1 5 gene_id:85289|Hs108|chr17 ( 181) 641 76.9 1e-14
CCDS32649.1 12 gene_id:83755|Hs108|chr17 ( 201) 635 76.4 1.6e-14
CCDS42331.1 3 gene_id:85290|Hs108|chr17 ( 195) 628 75.7 2.5e-14
CCDS45673.1 7 gene_id:100132476|Hs108|chr17 ( 155) 587 71.4 3.9e-13
CCDS45674.1 8 gene_id:728224|Hs108|chr17 ( 185) 588 71.6 3.9e-13
CCDS42958.1 5 gene_id:386680|Hs108|chr21 ( 271) 573 70.4 1.4e-12
CCDS54125.1 6 gene_id:81871|Hs108|chr17 ( 205) 559 68.8 3.1e-12
CCDS11383.1 4 gene_id:84616|Hs108|chr17 ( 166) 550 67.8 5.2e-12
CCDS42955.1 2 gene_id:386679|Hs108|chr21 ( 255) 522 65.3 4.5e-11
>>CCDS41591.1 3 gene_id:387266|Hs108|chr11 (238 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 1148.2 bits: 219.8 E(32554): 1.2e-57
Smith-Waterman score: 2071; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
190 200 210 220 230
>>CCDS41592.1 5 gene_id:439915|Hs108|chr11 (237 aa)
initn: 1368 init1: 922 opt: 1334 Z-score: 750.7 bits: 146.3 E(32554): 1.7e-35
Smith-Waterman score: 1337; 75.5% identity (79.5% similar) in 220 aa overlap (2-205:20-233)
10 20 30
pF1KE0 MGCSGCS---GGCGSSCGGCGSSCGGCG------SGYGGCGS
::.::. :::::.::::::.::::: .: :::::
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGS
10 20 30 40 50 60
40 50 60 70 80
pF1KE0 GCCVPVCCCKPVCCCVPACSCSSCG-----SCGGSKGVCGSCGGCKGGCGSCGGSKGGCG
:::::::::::.::::::::::::: :::::: : ::: ::.::::::::::::
CCDS41 GCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCG
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 SSCCVPVCCSSS--CGSCGGSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCC
: : .:. ::::::::: :: ::::::::: :::: :: ::::::::::::::
CCDS41 S------CGGSKGGCGSCGGSKGGCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCC
130 140 150 160 170
150 160 170 180 190 200
pF1KE0 QSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCS
::::::: : ::::::: : :::::::: : :::::::::::: :::: ::::: : ::
CCDS41 QSSCCKPYCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQ
180 190 200 210 220 230
210 220 230
pF1KE0 SGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
CCDS41 CKI
>>CCDS41684.1 10 gene_id:387273|Hs108|chr11 (202 aa)
initn: 1431 init1: 876 opt: 1270 Z-score: 716.8 bits: 139.8 E(32554): 1.3e-33
Smith-Waterman score: 1283; 68.0% identity (72.5% similar) in 247 aa overlap (1-238:1-202)
10 20 30 40 50
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSG---YG----GCGSGCCVPVCCCKPVCCCVPACS
::: ::::::::.::::::.::::::: :: ::::.:::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCGSSCCVPVCCCKPVCCCVPACS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 CSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGGSKGVC
:::::::::::: :::::: :::::::::::::::: : .:. ::::::::: :
CCDS41 CSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGS------CGGSKGGCGSCGGSKGGC
70 80 90 100 110
120 130 140 150 160 170
pF1KE0 GFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCC
: ::::::::::: :. .:::: :. ::: .::
CCDS41 GSCGGSKGGCGSCGGSK----------GGCGS-----------CG--------CSQCNCC
120 130 140
180 190 200 210 220 230
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVP
::::::::::: :::::::.::: ::::: : :: :::::::: :::::::
CCDS41 KPCCCSSGCGS-CCQSSCCNPCCCQSSCCVPVCC---------QSSCCKPCCCQSSCCVP
150 160 170 180 190
pF1KE0 ICCQCKI
.::::::
CCDS41 VCCQCKI
200
>>CCDS41683.1 8 gene_id:57830|Hs108|chr11 (187 aa)
initn: 2248 init1: 999 opt: 1103 Z-score: 627.0 bits: 123.0 E(32554): 1.3e-28
Smith-Waterman score: 1429; 73.9% identity (75.6% similar) in 238 aa overlap (1-238:1-187)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::::::::.::::::.:: ::::.::::.:::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCG-------GCGSSCCVPICCCKPVCCCVPACSCSSCGSC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
::::: ::::: :: ::::::::: :
CCDS41 GGSKGGRGSCGGSKGDCGSCGGSKG----------------------------------G
60 70
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
::::::::::::::::::::::::::::::::: ::::::::::: :::::
CCDS41 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKP----------CCSQSSCCKPCSCSSGC
80 90 100 110 120
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
130 140 150 160 170 180
>>CCDS41682.1 7 gene_id:440050|Hs108|chr11 (165 aa)
initn: 1921 init1: 866 opt: 1049 Z-score: 598.4 bits: 117.6 E(32554): 5.2e-27
Smith-Waterman score: 1224; 72.7% identity (74.6% similar) in 205 aa overlap (1-205:1-161)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::: ::::.::::::.::::::: :::::.::::::::::::::::::::::::::
CCDS41 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
::::: :::::: ::::::::::::::::
CCDS41 GGSKGGCGSCGGSKGGCGSCGGSKGGCGS-------------------------------
70 80
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
:::::::::::::::::::::::::::::: :: ::::::::::::::
CCDS41 ---CGCSQCSCYKPCCCSSGCGSSCCQSSCCKP----------CCCQSSCCKPCCCSSGC
90 100 110 120 130
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
::::::::::.::::::::: : ::
CCDS41 GSSCCQSSCCNPCCSQSSCCVPVCCQCKI
140 150 160
>>CCDS31330.1 1 gene_id:387264|Hs108|chr11 (278 aa)
initn: 2098 init1: 579 opt: 1021 Z-score: 581.2 bits: 115.1 E(32554): 4.7e-26
Smith-Waterman score: 1281; 60.3% identity (68.3% similar) in 287 aa overlap (1-238:1-278)
10 20 30 40 50
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGC-------CVPVCCCKPVCCCVPACS
::: :::::::::::::::.::::::: ::::::: :::::::::::: ::.::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
10 20 30 40 50 60
60 70 80 90 100
pF1KE0 CSSCG-----SCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGG
::::: : ::::: ::::::::::::::::::::::: : .:. ::::::
CCDS31 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS------CGGSKGGCGSCGG
70 80 90 100 110
110 120 130 140 150 160
pF1KE0 SKGVCGFRGGSKGGCGSCGCSQCSCYKP-CCCSSGCG-SSCCQSSCCKPSCSQSSC--C-
::: :: .. ::::: : : :: ::: .:. ::: ...: . .::...: :
CCDS31 SKGGCG---SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCG
120 130 140 150 160 170
170 180 190
pF1KE0 --KPCCSQSSCCKPCC---------CSSGCGSS---------CCQSSCCKPC--------
: :.. . :: : :.::::. ::. : : :
CCDS31 GSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCG
180 190 200 210 220 230
200 210 220 230
pF1KE0 --CSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
::: ::::::::::::::::::::::::: ::::::::.::::::
CCDS31 SSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
240 250 260 270
>>CCDS53677.1 9 gene_id:3846|Hs108|chr11 (169 aa)
initn: 1556 init1: 641 opt: 849 Z-score: 490.4 bits: 97.6 E(32554): 5.4e-21
Smith-Waterman score: 1128; 63.0% identity (64.7% similar) in 238 aa overlap (1-238:1-169)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::::::::::::: ::::.:::: ::: .::.:: ::::::::::::::::::
CCDS53 MGCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCG--
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
: :::::::::: :
CCDS53 -------------KRGCGSCGGSKG----------------------------------G
60 70
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
::::::::::: ::::::::::::::: ::::: ::: :::::::: :::
CCDS53 CGSCGCSQCSCCKPCCCSSGCGSSCCQCSCCKPYCSQCSCCKPCCS----------SSGR
80 90 100 110 120
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
::::::::::::::: ::::::::::::::::: ::: ::::.: ::::
CCDS53 GSSCCQSSCCKPCCS----------SSGCGSSCCQSSCCKPCCSQSRCCVPVCYQCKI
130 140 150 160
>>CCDS41685.1 11 gene_id:440051|Hs108|chr11 (156 aa)
initn: 1575 init1: 740 opt: 848 Z-score: 490.2 bits: 97.5 E(32554): 5.6e-21
Smith-Waterman score: 1020; 63.9% identity (67.3% similar) in 205 aa overlap (1-205:1-152)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::::::::.::::::. :::::: :::::.::::.:::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
::::: ::::::.:::::::
CCDS41 GGSKG----------GCGSCGSSKGGCGS-------------------------------
70
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
::::: .: :::: :::::: :::::: :: : ::::: ::::::::::.:
CCDS41 ---CGCSQSNCCKPCCSSSGCGSFCCQSSCSKPCCCQSSCC-----QSSCCKPCCCQS--
80 90 100 110 120
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
::::::: :::: ::::: : ::
CCDS41 --SCCQSSCFKPCCCQSSCCVPVCCQCKI
130 140 150
>>CCDS31331.1 2 gene_id:440021|Hs108|chr11 (177 aa)
initn: 1504 init1: 686 opt: 816 Z-score: 472.4 bits: 94.3 E(32554): 5.4e-20
Smith-Waterman score: 1000; 61.3% identity (62.6% similar) in 222 aa overlap (1-201:1-176)
10 20 30
pF1KE0 MGCSGCS-------GGCGSSCGGCGSSCGGCGSGYGGCGSGC--C------------VPV
::: ::: ::::::::::::.::::::: ::::::: : :::
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 CCCKPVCCCVPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSS
::::::: ::::::.:::::::::: :::::: ::::::::::::::::
CCDS31 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS----------
70 80 90 100 110
100 110 120 130 140 150
pF1KE0 SCGSCGGSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSS
::::: :: ::::::::::::::::::::: : :::
CCDS31 ------------------------CGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSS
120 130 140
160 170 180 190 200 210
pF1KE0 CCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCC
:: : : :::::::::: ::.:: : : : ::
CCDS31 CCVPVCCQSSCCKPCCC---------QSNCCVPVCCQ---CKI
150 160 170
220 230
pF1KE0 KPCSSQSSCCVPICCQCKI
>>CCDS31332.1 6 gene_id:440023|Hs108|chr11 (129 aa)
initn: 1303 init1: 628 opt: 754 Z-score: 440.2 bits: 87.9 E(32554): 3.4e-18
Smith-Waterman score: 892; 65.7% identity (69.2% similar) in 172 aa overlap (1-172:1-128)
10 20 30 40 50 60
pF1KE0 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPACSCSSCGSC
::: ::::::::.::::::.::::: :.::::.:::::::::::::::.:::::
CCDS31 MGCCGCSGGCGSGCGGCGSGCGGCG-------SSCCVPICCCKPVCCCVPACSCTSCGSC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG
::::: :::::: ::::::::::::::::
CCDS31 GGSKGCCGSCGGSKGGCGSCGGSKGGCGS-------------------------------
60 70 80
130 140 150 160 170 180
pF1KE0 CGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGC
:::::::: ::: ::::::::::::::::: :::.::: : : : ::
CCDS31 ---CGCSQCSCCKPCYCSSGCGSSCCQSSCCKPCCSQASCCVPICCQ---CKI
90 100 110 120
190 200 210 220 230
pF1KE0 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
238 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:07:10 2016 done: Wed Nov 2 23:07:10 2016
Total Scan time: 1.960 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]