Result of FASTA (ccds) for
pFN21AE0230
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0230, 177 aa
1>>>pF1KE0230 177 - 177 aa - 177 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1936+/-0.00142; mu= 8.9175+/- 0.086
mean_var=346.7105+/-66.571, 0's: 0 Z-trim(111.9): 118 B-trim: 24 in 1/50
Lambda= 0.068880
statistics sampled from 12656 (12770) to 12656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.392), width: 16
Scan time: 1.770
The best scores are: opt bits E(32554)
CCDS31331.1 2 gene_id:440021|Hs108|chr11 ( 177) 1564 167.9 2.8e-42
CCDS41682.1 7 gene_id:440050|Hs108|chr11 ( 165) 1090 120.8 4.1e-28
CCDS41683.1 8 gene_id:57830|Hs108|chr11 ( 187) 1006 112.5 1.4e-25
CCDS41685.1 11 gene_id:440051|Hs108|chr11 ( 156) 986 110.4 5.2e-25
CCDS31332.1 6 gene_id:440023|Hs108|chr11 ( 129) 960 107.7 2.8e-24
CCDS41592.1 5 gene_id:439915|Hs108|chr11 ( 237) 913 103.5 9.7e-23
CCDS41684.1 10 gene_id:387273|Hs108|chr11 ( 202) 879 100.0 9.3e-22
CCDS31330.1 1 gene_id:387264|Hs108|chr11 ( 278) 850 97.3 8.1e-21
CCDS41591.1 3 gene_id:387266|Hs108|chr11 ( 238) 816 93.8 7.8e-20
CCDS53677.1 9 gene_id:3846|Hs108|chr11 ( 169) 724 84.4 3.7e-17
CCDS42331.1 3 gene_id:85290|Hs108|chr17 ( 195) 531 65.4 2.4e-11
CCDS54124.1 9 gene_id:100132386|Hs108|chr17 ( 210) 515 63.8 7.4e-11
CCDS45675.1 11 gene_id:653240|Hs108|chr17 ( 195) 514 63.7 7.6e-11
>>CCDS31331.1 2 gene_id:440021|Hs108|chr11 (177 aa)
initn: 1564 init1: 1564 opt: 1564 Z-score: 872.5 bits: 167.9 E(32554): 2.8e-42
Smith-Waterman score: 1564; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
130 140 150 160 170
>>CCDS41682.1 7 gene_id:440050|Hs108|chr11 (165 aa)
initn: 1872 init1: 1043 opt: 1090 Z-score: 618.2 bits: 120.8 E(32554): 4.1e-28
Smith-Waterman score: 1187; 77.4% identity (80.1% similar) in 186 aa overlap (1-177:1-165)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
:::::::.:::::::::::.::::::::::::: :: : :::
CCDS41 MGCCGCSEGCGSGCGGCGSGCGGCGSGCGGCGS--------------SC------C-VPV
10 20 30
70 80 90 100 110 120
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
::::::: ::::::.::::::::::::::::::::::::::::::::::::::: :: :
CCDS41 CCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCYK
40 50 60 70 80 90
130 140 150 160 170
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCC---------QSSCCKPCCCQSNCCVPV
:::::::::::::::::::::::::::: : :: :::::.::: ::.:::::
CCDS41 PCCCSSGCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPV
100 110 120 130 140 150
pF1KE0 CCQCKI
::::::
CCDS41 CCQCKI
160
>>CCDS41683.1 8 gene_id:57830|Hs108|chr11 (187 aa)
initn: 2190 init1: 953 opt: 1006 Z-score: 572.6 bits: 112.5 E(32554): 1.4e-25
Smith-Waterman score: 1050; 78.8% identity (82.7% similar) in 156 aa overlap (27-173:2-154)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
:: ::. ::::::::::.:.:::::: : ::.
CCDS41 MGCCGCS---GGCGSGCGGCGSGCGGCGSSCCVPI
10 20 30
70 80 90 100 110 120
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
::::::: ::::::.::::::::::: :::::::: :::::::::::::::::: :: :
CCDS41 CCCKPVCCCVPACSCSSCGSCGGSKGGRGSCGGSKGDCGSCGGSKGGCGSCGCSQCSCYK
40 50 60 70 80 90
130 140 150 160 170
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPV---------CCQSSCCKPCCCQSNCCVPV
:::::::::::::::::::::: ::::: : ::::::::::: ::.:: :
CCDS41 PCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPC
100 110 120 130 140 150
pF1KE0 CCQCKI
::
CCDS41 CCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
160 170 180
>>CCDS41685.1 11 gene_id:440051|Hs108|chr11 (156 aa)
initn: 955 init1: 955 opt: 986 Z-score: 562.5 bits: 110.4 E(32554): 5.2e-25
Smith-Waterman score: 1050; 70.6% identity (73.8% similar) in 187 aa overlap (1-177:1-156)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::::::: ::::::::::::: ::::::::::.::: : ::.
CCDS41 MGCCGCS--------------GGCGSGCGGCGSGSGGCGSGCGGCGSSC------C-VPI
10 20 30
70 80 90 100 110 120
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
::::::: ::::::.::::::::::::::::.::::::: ::::::.:::
CCDS41 CCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGSSKGGCGS----------CGCSQSNCCK
40 50 60 70 80
130 140 150 160 170
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCV-----PVCCQSSCC-----KPCCCQSNCCVP
::: :::::: :::::: :::::::::: : ::::::: :::::::.::::
CCDS41 PCCSSSGCGSFCCQSSCSKPCCCQSSCCQSSCCKPCCCQSSCCQSSCFKPCCCQSSCCVP
90 100 110 120 130 140
pF1KE0 VCCQCKI
:::::::
CCDS41 VCCQCKI
150
>>CCDS31332.1 6 gene_id:440023|Hs108|chr11 (129 aa)
initn: 948 init1: 948 opt: 960 Z-score: 549.3 bits: 107.7 E(32554): 2.8e-24
Smith-Waterman score: 960; 84.2% identity (88.7% similar) in 133 aa overlap (27-159:2-128)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
:: ::. ::::::::::.:.:::::: : ::.
CCDS31 MGCCGCS---GGCGSGCGGCGSGCGGCGSSCCVPI
10 20 30
70 80 90 100 110 120
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCK
::::::: ::::::::::::::::: :::::::::::::::::::::::::::: ::::
CCDS31 CCCKPVCCCVPACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCK
40 50 60 70 80 90
130 140 150 160 170
pF1KE0 PCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
:: ::::::::::::::::::: :.:::::.::: ::
CCDS31 PCYCSSGCGSSCCQSSCCKPCCSQASCCVPICCQ---CKI
100 110 120
>>CCDS41592.1 5 gene_id:439915|Hs108|chr11 (237 aa)
initn: 2514 init1: 780 opt: 913 Z-score: 521.7 bits: 103.5 E(32554): 9.7e-23
Smith-Waterman score: 1187; 67.0% identity (70.0% similar) in 230 aa overlap (6-177:10-237)
10 20 30 40 50
pF1KE0 MGCCGCSRGCG---SGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCG-GCSSSCGGC
:. ::: ::::::::.:::::::::::::: :::: ::: ::.. ::::
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCG-GCGSGCAG-CGGC
10 20 30 40 50
60 70 80
pF1KE0 GSRCYVPVCCCKPVCSWVPACSCTSCG-------------------------SCGGSKGG
:: : ::::::::.: ::::::.::: ::::::::
CCDS41 GSGCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGG
60 70 80 90 100 110
90 100 110 120 130
pF1KE0 CGSCGGSKGGCGSCGGSKGGCGSCG----------CSQSSCCKPCCCSSGCGSSCCQSSC
::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS41 CGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSC
120 130 140 150 160 170
140 150 160 170
pF1KE0 CKPCCCQSSCCVPVCCQSSCCKPC-------------------CCQSNCCVPVCCQCKI
::: ::::::: : :::::::::: ::::.:::::::::::
CCDS41 CKPYCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQCKI
180 190 200 210 220 230
>>CCDS41684.1 10 gene_id:387273|Hs108|chr11 (202 aa)
initn: 2724 init1: 798 opt: 879 Z-score: 504.1 bits: 100.0 E(32554): 9.3e-22
Smith-Waterman score: 1142; 68.1% identity (70.5% similar) in 210 aa overlap (1-170:1-195)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::::::: :::::::::::.:::::::::: ::: :::::: : :::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSG--------------CGGCGSSCCVPV
10 20 30 40
70 80
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKG----------------------------------
::::::: ::::::.::::::::::
CCDS41 CCCKPVCCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS
50 60 70 80 90 100
90 100 110 120 130 140
pF1KE0 ------GCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKP
::::::::::::::::::::::::::::: .::::::::::::: :::::::.:
CCDS41 CGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCNCCKPCCCSSGCGS-CCQSSCCNP
110 120 130 140 150 160
150 160 170
pF1KE0 CCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
:::::::::::::::::::::::::.::::
CCDS41 CCCQSSCCVPVCCQSSCCKPCCCQSSCCVPVCCQCKI
170 180 190 200
>>CCDS31330.1 1 gene_id:387264|Hs108|chr11 (278 aa)
initn: 1474 init1: 457 opt: 850 Z-score: 487.3 bits: 97.3 E(32554): 8.1e-21
Smith-Waterman score: 902; 64.1% identity (72.8% similar) in 184 aa overlap (1-175:1-170)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::::::: :::::::::::::::::::: ::::::::: .::: : :::
CCDS31 MGCCGCS-------GGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSC--C-----VPV
10 20 30 40
70 80 90 100 110
pF1KE0 CCCKPVCSWVPACSCTSCG-----SCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQ
::::::: ::.:::.::: : :::::::::::: :::::::::::::::::: :.
CCDS31 CCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSK
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE0 SSCCKPCCCSSGCGSSC--CQSSCCKP-CCCQS-SCCVPVCCQSSCCKPCCCQSNCCVPV
..: . ..::::.: : :::: : :::. ::::.: ::: : : . .: .
CCDS31 GGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGA
110 120 130 140 150 160
pF1KE0 CCQCKI
: .:
CCDS31 CGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGS
170 180 190 200 210 220
>--
initn: 746 init1: 365 opt: 569 Z-score: 336.3 bits: 69.4 E(32554): 2.1e-12
Smith-Waterman score: 692; 61.1% identity (69.1% similar) in 149 aa overlap (11-159:171-277)
10 20 30 40
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGS
:.. ::::: :::: .:::.::...:::::
CCDS31 CCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS-CGGCKGGCGSCGGSKGGCGS
150 160 170 180 190
50 60 70 80 90 100
pF1KE0 GCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGS
:::::.:.:: :::::: ::.:::::.::::::::
CCDS31 GCGGCGSGCG-------VPVCCC----------SCSSCGSCAGSKGGCGS----------
200 210 220 230
110 120 130 140 150 160
pF1KE0 CGGSKGGCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKP
.::: :::::::::::::::::::::::::: ::::::::::: ::
CCDS31 -----------SCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQ---CKI
240 250 260 270
170
pF1KE0 CCCQSNCCVPVCCQCKI
>>CCDS41591.1 3 gene_id:387266|Hs108|chr11 (238 aa)
initn: 2845 init1: 686 opt: 816 Z-score: 469.6 bits: 93.8 E(32554): 7.8e-20
Smith-Waterman score: 994; 63.5% identity (65.4% similar) in 208 aa overlap (1-174:1-186)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::: ::: ::::::::::::.::::::: ::::::: : :::
CCDS41 MGCSGCS-------GGCGSSCGGCGSSCGGCGSGYGGCGSGC------C--------VPV
10 20 30
70 80 90 100 110
pF1KE0 CCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS----------
::::::: ::::::.:::::::::: :::::: ::::::::::::::::
CCDS41 CCCKPVCCCVPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSS
40 50 60 70 80 90
120 130 140
pF1KE0 ------------------------CGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSS
::::: :: ::::::::::::::::::::: : :::
CCDS41 SCGSCGGSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSS
100 110 120 130 140 150
150 160 170
pF1KE0 CCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
:: : : ::::::::::.:.: :::
CCDS41 CCKPCCSQSSCCKPCCCSSGCG-SSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSC
160 170 180 190 200 210
>>CCDS53677.1 9 gene_id:3846|Hs108|chr11 (169 aa)
initn: 2062 init1: 475 opt: 724 Z-score: 421.5 bits: 84.4 E(32554): 3.7e-17
Smith-Waterman score: 899; 62.8% identity (68.6% similar) in 191 aa overlap (1-177:1-169)
10 20 30 40 50 60
pF1KE0 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
::::::: ::::.:::: ::::.::::: ::: :: : .::
CCDS53 MGCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGP--------------SC------C-APV
10 20 30
70 80 90 100
pF1KE0 CCCKPVCSWVPACSCTSCG-----SCGGSKGGCGSCGGSKGGC-------GSCGGSKGGC
:::::: ::::::.::: ::::::::::::: :. .: ..::.: :
CCDS53 YCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQC
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE0 GSCG--CSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSN
. : ::: ::::::: ::: :::::::::::::: .:: : ::::::::::: ::
CCDS53 SCCKPYCSQCSCCKPCCSSSGRGSSCCQSSCCKPCC-SSSGCGSSCCQSSCCKPCCSQSR
100 110 120 130 140 150
170
pF1KE0 CCVPVCCQCKI
:::::: ::::
CCDS53 CCVPVCYQCKI
160
177 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:22:22 2016 done: Thu Nov 3 20:22:23 2016
Total Scan time: 1.770 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]