(Linear) (Six-base) MAPSORT of: KIAA0166.seq Check: 7356 from: 1 to: 6627 KIAA0166.orf With 182 enzymes: SgfI * December 5, 2014 12:52 .. AccI GT'mk_AC Cuts at: 0 536 1364 3697 4909 6627 Size: 536 828 2333 1212 1718 Fragments arranged by size: 2333 1718 1212 828 536 Acc65I G'GTAC_C Cuts at: 0 47 445 3838 6627 Size: 47 398 3393 2789 Fragments arranged by size: 3393 2789 398 47 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 275 484 525 956 1157 1250 1871 2783 Size: 275 209 41 431 201 93 621 912 Cuts at: 2783 3573 3760 3769 3832 4369 4960 4975 5117 Size: 790 187 9 63 537 591 15 142 Cuts at: 5117 5653 6024 6512 6622 6627 Size: 536 371 488 110 5 Fragments arranged by size: 912 790 621 591 537 536 488 431 371 275 209 201 187 142 110 93 63 41 15 9 5 AflII C'TTAA_G Cuts at: 0 162 2887 4186 6510 6627 Size: 162 2725 1299 2324 117 Fragments arranged by size: 2725 2324 1299 162 117 AflIII A'CryG_T Cuts at: 0 3316 4734 4904 4920 5450 6627 Size: 3316 1418 170 16 530 1177 Fragments arranged by size: 3316 1418 1177 530 170 16 AgeI A'CCGG_T Cuts at: 0 673 6627 Size: 673 5954 AleI CACnn'nnGTG Cuts at: 0 2155 6627 Size: 2155 4472 AlwNI CAG_nnn'CTG Cuts at: 0 1150 2466 3168 3367 5248 6583 6627 Size: 1150 1316 702 199 1881 1335 44 Fragments arranged by size: 1881 1335 1316 1150 702 199 44 ApaLI G'TGCA_C Cuts at: 0 1688 6627 Size: 1688 4939 ApoI r'AATT_y Cuts at: 0 512 1405 1597 1621 3756 4691 4817 5125 Size: 512 893 192 24 2135 935 126 308 Cuts at: 5125 5354 5361 6279 6596 6627 Size: 229 7 918 317 31 Fragments arranged by size: 2135 935 918 893 512 317 308 229 192 126 31 24 7 AseI AT'TA_AT Cuts at: 0 955 4640 4646 4876 5429 6627 Size: 955 3685 6 230 553 1198 Fragments arranged by size: 3685 1198 955 553 230 6 AvaI C'yCGr_G Cuts at: 0 5660 6627 Size: 5660 967 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 39 72 242 275 6627 Size: 39 33 170 33 6352 Fragments arranged by size: 6352 170 39 33 33 BamHI G'GATC_C Cuts at: 0 4566 6627 Size: 4566 2061 BanI G'GyrC_C Cuts at: 0 47 445 3838 6627 Size: 47 398 3393 2789 Fragments arranged by size: 3393 2789 398 47 BanII G_rGCy'C Cuts at: 0 1554 3113 3136 4147 5667 6627 Size: 1554 1559 23 1011 1520 960 Fragments arranged by size: 1559 1554 1520 1011 960 23 BbsI GAAGACnn'nnnn_ Cuts at: 0 1145 2732 2875 3838 6627 Size: 1145 1587 143 963 2789 Fragments arranged by size: 2789 1587 1145 963 143 BbvCI CC'TCA_GC Cuts at: 0 3122 6627 Size: 3122 3505 BciVI GTATCCnnnnn_n' Cuts at: 0 6022 6627 Size: 6022 605 BclI T'GATC_A Cuts at: 0 2084 6105 6627 Size: 2084 4021 522 Fragments arranged by size: 4021 2084 522 BfrBI ATG'CAT Cuts at: 0 367 5634 6456 6627 Size: 367 5267 822 171 Fragments arranged by size: 5267 822 367 171 BglII A'GATC_T Cuts at: 0 113 2678 3039 4020 6627 Size: 113 2565 361 981 2607 Fragments arranged by size: 2607 2565 981 361 113 Bme1580I G_kGCm'C Cuts at: 0 1692 2802 5242 6627 Size: 1692 1110 2440 1385 Fragments arranged by size: 2440 1692 1385 1110 BmrI ACTGGGnnnn_n' Cuts at: 0 3305 3349 4209 6627 Size: 3305 44 860 2418 Fragments arranged by size: 3305 2418 860 44 BmtI G_CTAG'C Cuts at: 0 2975 3811 6352 6627 Size: 2975 836 2541 275 Fragments arranged by size: 2975 2541 836 275 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 653 1771 2871 3217 5991 6560 6627 Size: 653 1118 1100 346 2774 569 67 Fragments arranged by size: 2774 1118 1100 653 569 346 67 Bpu10I CC'TnA_GC Cuts at: 0 1373 2053 3122 6627 Size: 1373 680 1069 3505 Fragments arranged by size: 3505 1373 1069 680 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1442 2386 3234 3631 4516 6627 Size: 1442 944 848 397 885 2111 Fragments arranged by size: 2111 1442 944 885 848 397 BsaAI yAC'GTr Cuts at: 0 879 929 4905 6627 Size: 879 50 3976 1722 Fragments arranged by size: 3976 1722 879 50 BsaBI GATnn'nnATC Cuts at: 0 392 1992 6627 Size: 392 1600 4635 Fragments arranged by size: 4635 1600 392 BsaWI w'CCGG_w Cuts at: 0 37 673 6627 Size: 37 636 5954 Fragments arranged by size: 5954 636 37 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 834 864 6627 Size: 834 30 5763 Fragments arranged by size: 5763 834 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 2269 3144 4688 5545 6627 Size: 2269 875 1544 857 1082 Fragments arranged by size: 2269 1544 1082 875 857 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2456 3139 3976 4029 5566 6627 Size: 2456 683 837 53 1537 1061 Fragments arranged by size: 2456 1537 1061 837 683 53 BsiEI CG_ry'CG Cuts at: 0 5236 6627 Size: 5236 1391 BsiHKAI G_wGCw'C Cuts at: 0 1554 1692 2402 3103 4522 5255 5667 6627 Size: 1554 138 710 701 1419 733 412 960 Fragments arranged by size: 1554 1419 960 733 710 701 412 138 BsmI GAATG_Cn' Cuts at: 0 685 3879 4223 5594 6627 Size: 685 3194 344 1371 1033 Fragments arranged by size: 3194 1371 1033 685 344 Bsp1286I G_dGCh'C Cuts at: 0 1554 1692 2402 2802 3103 3113 3136 4147 Size: 1554 138 710 400 301 10 23 1011 Cuts at: 4147 4522 5242 5255 5667 6627 Size: 375 720 13 412 960 Fragments arranged by size: 1554 1011 960 720 710 412 400 375 301 138 23 13 10 BspHI T'CATG_A Cuts at: 0 3527 3869 6627 Size: 3527 342 2758 Fragments arranged by size: 3527 2758 342 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 5933 6018 6627 Size: 5933 85 609 Fragments arranged by size: 5933 609 85 BsrDI GCAATG_nn' Cuts at: 0 3291 4855 6627 Size: 3291 1564 1772 Fragments arranged by size: 3291 1772 1564 BsrFI r'CCGG_y Cuts at: 0 673 4423 5228 6627 Size: 673 3750 805 1399 Fragments arranged by size: 3750 1399 805 673 BsrGI T'GTAC_A Cuts at: 0 2273 6627 Size: 2273 4354 BssSI C'ACGA_G Cuts at: 0 5866 6627 Size: 5866 761 BstBI TT'CG_AA Cuts at: 0 4870 4928 6627 Size: 4870 58 1699 Fragments arranged by size: 4870 1699 58 BstXI CCAn_nnnn'nTGG Cuts at: 0 4482 6627 Size: 4482 2145 BstYI r'GATC_y Cuts at: 0 113 1391 2678 3039 3555 4020 4566 4707 Size: 113 1278 1287 361 516 465 546 141 Cuts at: 4707 6627 Size: 1920 Fragments arranged by size: 1920 1287 1278 546 516 465 361 141 113 Bsu36I CC'TnA_GG Cuts at: 0 6302 6627 Size: 6302 325 BtgI C'CryG_G Cuts at: 0 1804 2348 2876 4703 5873 6627 Size: 1804 544 528 1827 1170 754 Fragments arranged by size: 1827 1804 1170 754 544 528 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 4388 5153 6120 6475 6627 Size: 4388 765 967 355 152 Fragments arranged by size: 4388 967 765 355 152 BtsI GCAGTG_nn' Cuts at: 0 2426 3279 6073 6555 6581 6627 Size: 2426 853 2794 482 26 46 Fragments arranged by size: 2794 2426 853 482 46 26 DraI TTT'AAA Cuts at: 0 509 1812 2642 2961 5718 5996 6314 6627 Size: 509 1303 830 319 2757 278 318 313 Fragments arranged by size: 2757 1303 830 509 319 318 313 278 DraIII CAC_nnn'GTG Cuts at: 0 3858 6627 Size: 3858 2769 EaeI y'GGCC_r Cuts at: 0 1924 4425 4484 6627 Size: 1924 2501 59 2143 Fragments arranged by size: 2501 2143 1924 59 EarI CTCTTCn'nnn_ Cuts at: 0 123 878 2813 3560 4396 5535 5672 5683 Size: 123 755 1935 747 836 1139 137 11 Cuts at: 5683 6320 6627 Size: 637 307 Fragments arranged by size: 1935 1139 836 755 747 637 307 137 123 11 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 414 6627 Size: 414 6213 EcoICRI GAG'CTC Cuts at: 0 1552 5665 6627 Size: 1552 4113 962 Fragments arranged by size: 4113 1552 962 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 275 484 525 653 956 1157 1250 1771 Size: 275 209 41 128 303 201 93 521 Cuts at: 1771 1871 2783 2871 3217 3573 3760 3769 3832 Size: 100 912 88 346 356 187 9 63 Cuts at: 3832 4369 4960 4975 5117 5653 5991 6024 6512 Size: 537 591 15 142 536 338 33 488 Cuts at: 6512 6560 6622 6627 Size: 48 62 5 Fragments arranged by size: 912 591 537 536 521 488 356 346 338 303 275 209 201 187 142 128 100 93 88 63 62 48 41 33 15 9 5 EcoNI CCTnn'n_nnAGG Cuts at: 0 5083 5828 6627 Size: 5083 745 799 Fragments arranged by size: 5083 799 745 EcoRI G'AATT_C Cuts at: 0 5354 5361 6627 Size: 5354 7 1266 Fragments arranged by size: 5354 1266 7 EcoRV GAT'ATC Cuts at: 0 3685 5091 5114 6627 Size: 3685 1406 23 1513 Fragments arranged by size: 3685 1513 1406 23 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 907 1660 1696 6627 Size: 907 753 36 4931 Fragments arranged by size: 4931 907 753 36 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 774 806 1132 1164 2069 2101 2588 2605 Size: 774 32 326 32 905 32 487 17 Cuts at: 2605 2620 2637 2670 2702 3384 3416 3639 3671 Size: 15 17 33 32 682 32 223 32 Cuts at: 3671 5829 5861 5964 5996 6097 6129 6627 Size: 2158 32 103 32 101 32 498 Fragments arranged by size: 2158 905 774 682 498 487 326 223 103 101 33 32 32 32 32 32 32 32 32 32 17 17 15 HincII GTy'rAC Cuts at: 0 4961 5046 5642 6627 Size: 4961 85 596 985 Fragments arranged by size: 4961 985 596 85 HindIII A'AGCT_T Cuts at: 0 1178 3325 3533 5212 5953 6524 6627 Size: 1178 2147 208 1679 741 571 103 Fragments arranged by size: 2147 1679 1178 741 571 208 103 HpaI GTT'AAC Cuts at: 0 4961 5642 6627 Size: 4961 681 985 Fragments arranged by size: 4961 985 681 KpnI G_GTAC'C Cuts at: 0 51 449 3842 6627 Size: 51 398 3393 2785 Fragments arranged by size: 3393 2785 398 51 MfeI C'AATT_G Cuts at: 0 232 524 1942 5570 6319 6627 Size: 232 292 1418 3628 749 308 Fragments arranged by size: 3628 1418 749 308 292 232 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1859 4346 4709 5438 6627 Size: 1859 2487 363 729 1189 Fragments arranged by size: 2487 1859 1189 729 363 MscI TGG'CCA Cuts at: 0 1926 4486 6627 Size: 1926 2560 2141 Fragments arranged by size: 2560 2141 1926 MslI CAynn'nnrTG Cuts at: 0 2155 3284 6627 Size: 2155 1129 3343 Fragments arranged by size: 3343 2155 1129 MspA1I CmG'CkG Cuts at: 0 780 2440 4756 6111 6627 Size: 780 1660 2316 1355 516 Fragments arranged by size: 2316 1660 1355 780 516 NaeI GCC'GGC Cuts at: 0 4425 6627 Size: 4425 2202 NcoI C'CATG_G Cuts at: 0 1804 2348 5873 6627 Size: 1804 544 3525 754 Fragments arranged by size: 3525 1804 754 544 NdeI CA'TA_TG Cuts at: 0 2794 3561 5802 6332 6627 Size: 2794 767 2241 530 295 Fragments arranged by size: 2794 2241 767 530 295 NgoMIV G'CCGG_C Cuts at: 0 4423 6627 Size: 4423 2204 NheI G'CTAG_C Cuts at: 0 2971 3807 6348 6627 Size: 2971 836 2541 279 Fragments arranged by size: 2971 2541 836 279 NsiI A_TGCA'T Cuts at: 0 369 5636 6458 6627 Size: 369 5267 822 169 Fragments arranged by size: 5267 822 369 169 NspI r_CATG'y Cuts at: 0 158 3320 3931 4738 5454 6460 6627 Size: 158 3162 611 807 716 1006 167 Fragments arranged by size: 3162 1006 807 716 611 167 158 PciI A'CATG_T Cuts at: 0 3316 4734 5450 6627 Size: 3316 1418 716 1177 Fragments arranged by size: 3316 1418 1177 716 PflMI CCAn_nnn'nTGG Cuts at: 0 1933 6627 Size: 1933 4694 PfoI T'CCnGG_A Cuts at: 0 1394 6627 Size: 1394 5233 PmlI CAC'GTG Cuts at: 0 929 6627 Size: 929 5698 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 45 77 853 885 5649 5681 6627 Size: 45 32 776 32 4764 32 946 Fragments arranged by size: 4764 946 776 45 32 32 32 PsiI TTA'TAA Cuts at: 0 2221 3754 6627 Size: 2221 1533 2873 Fragments arranged by size: 2873 2221 1533 PspXI vC'TCGA_Gb Cuts at: 0 5660 6627 Size: 5660 967 PstI C_TGCA'G Cuts at: 0 2781 2924 3179 5930 6627 Size: 2781 143 255 2751 697 Fragments arranged by size: 2781 2751 697 255 143 PvuI CG_AT'CG Cuts at: 0 5236 6627 Size: 5236 1391 PvuII CAG'CTG Cuts at: 0 780 2440 4756 6111 6627 Size: 780 1660 2316 1355 516 Fragments arranged by size: 2316 1660 1355 780 516 SacI G_AGCT'C Cuts at: 0 1554 5667 6627 Size: 1554 4113 960 Fragments arranged by size: 4113 1554 960 SapI GCTCTTCn'nnn_ Cuts at: 0 2813 4396 5672 6320 6627 Size: 2813 1583 1276 648 307 Fragments arranged by size: 2813 1583 1276 648 307 ScaI AGT'ACT Cuts at: 0 1160 4206 6627 Size: 1160 3046 2421 Fragments arranged by size: 3046 2421 1160 SexAI A'CCwGG_T Cuts at: 0 5487 6627 Size: 5487 1140 SfcI C'TryA_G Cuts at: 0 899 2682 2777 2861 2920 3175 3482 4826 Size: 899 1783 95 84 59 255 307 1344 Cuts at: 4826 4910 5039 5060 5155 5702 5926 6627 Size: 84 129 21 95 547 224 701 Fragments arranged by size: 1783 1344 899 701 547 307 255 224 129 95 95 84 84 59 21 SmlI C'TyrA_G Cuts at: 0 162 1457 2401 2887 3213 3610 4186 4495 Size: 162 1295 944 486 326 397 576 309 Cuts at: 4495 5660 6510 6627 Size: 1165 850 117 Fragments arranged by size: 1295 1165 944 850 576 486 397 326 309 162 117 SphI G_CATG'C Cuts at: 0 158 6460 6627 Size: 158 6302 167 Fragments arranged by size: 6302 167 158 SspI AAT'ATT Cuts at: 0 4348 4638 4644 5284 6547 6627 Size: 4348 290 6 640 1263 80 Fragments arranged by size: 4348 1263 640 290 80 6 StuI AGG'CCT Cuts at: 0 130 2848 6627 Size: 130 2718 3779 Fragments arranged by size: 3779 2718 130 StyI C'CwwG_G Cuts at: 0 1804 2348 2428 3689 4428 5873 6627 Size: 1804 544 80 1261 739 1445 754 Fragments arranged by size: 1804 1445 1261 754 739 544 80 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1360 6627 Size: 1360 5267 TatI w'GTAC_w Cuts at: 0 544 1158 2102 2273 4204 6627 Size: 544 614 944 171 1931 2423 Fragments arranged by size: 2423 1931 944 614 544 171 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 834 866 5364 5396 6627 Size: 834 32 4498 32 1231 Fragments arranged by size: 4498 1231 834 32 32 Tth111I GACn'n_nGTC Cuts at: 0 1144 6627 Size: 1144 5483 XbaI T'CTAG_A Cuts at: 0 4710 6627 Size: 4710 1917 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 3192 3566 6627 Size: 3192 374 3061 Fragments arranged by size: 3192 3061 374 XhoI C'TCGA_G Cuts at: 0 5660 6627 Size: 5660 967 XmnI GAAnn'nnTTC Cuts at: 0 887 4692 6627 Size: 887 3805 1935 Fragments arranged by size: 3805 1935 887 Enzymes that do cut: AccI Acc65I AcuI AflII AflIII AgeI AleI AlwNI ApaLI ApoI AseI AvaI BaeI BamHI BanI BanII BbsI BbvCI BciVI BclI BfrBI BglII Bme1580I BmrI BmtI BpmI Bpu10I BpuEI BsaAI BsaBI BsaWI BsaXI BseRI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrDI BsrFI BsrGI BssSI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoRI EcoRV FalI Hin4I HincII HindIII HpaI KpnI MfeI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NsiI NspI PciI PflMI PfoI PmlI PpiI PsiI PspXI PstI PvuI PvuII SacI SapI ScaI SexAI SfcI SmlI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmnI Enzymes that do not cut: AarI AatII AclI AfeI AhdI AlfI AloI ApaI AscI AsiSI AvrII BbeI BcgI BglI BlpI BmgBI BplI BsaI BsaHI BseYI BsiWI BsmBI BspEI BsrBI BssHII BstAPI BstEII BstZ17I ClaI CspCI DrdI EagI EcoO109I FseI FspI FspAI HaeII KasI MluI NarI NotI NruI PacI PasI PmeI PpuMI PshAI PspOMI PsrI RsrII SacII SalI SanDI SbfI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SwaI XmaI ZraI