(Linear) (Six-base) MAPSORT of: KIAA1354.seq Check: 5632 from: 1 to: 1851 KIAA1354.orf With 182 enzymes: SgfI * March 22, 2012 15:29 .. Acc65I G'GTAC_C Cuts at: 0 162 1851 Size: 162 1689 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 328 349 553 1491 1811 1823 1851 Size: 328 21 204 938 320 12 28 Fragments arranged by size: 938 328 320 204 28 21 12 AflII C'TTAA_G Cuts at: 0 619 1851 Size: 619 1232 AleI CACnn'nnGTG Cuts at: 0 1181 1851 Size: 1181 670 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1040 1851 Size: 1040 811 AlwNI CAG_nnn'CTG Cuts at: 0 930 1851 Size: 930 921 ApoI r'AATT_y Cuts at: 0 801 1851 Size: 801 1050 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 146 179 1851 Size: 146 33 1672 Fragments arranged by size: 1672 146 33 BanI G'GyrC_C Cuts at: 0 162 1851 Size: 162 1689 BanII G_rGCy'C Cuts at: 0 1388 1851 Size: 1388 463 BbsI GAAGACnn'nnnn_ Cuts at: 0 683 1851 Size: 683 1168 BclI T'GATC_A Cuts at: 0 120 1851 Size: 120 1731 BglII A'GATC_T Cuts at: 0 982 1851 Size: 982 869 Bme1580I G_kGCm'C Cuts at: 0 972 1188 1851 Size: 972 216 663 Fragments arranged by size: 972 663 216 BmrI ACTGGGnnnn_n' Cuts at: 0 569 1851 Size: 569 1282 BmtI G_CTAG'C Cuts at: 0 389 821 1851 Size: 389 432 1030 Fragments arranged by size: 1030 432 389 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1498 1851 Size: 1498 353 Bpu10I CC'TnA_GC Cuts at: 0 667 1851 Size: 667 1184 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1200 1851 Size: 1200 651 BsaAI yAC'GTr Cuts at: 0 759 1851 Size: 759 1092 BsaHI Gr'CG_yC Cuts at: 0 32 211 1851 Size: 32 179 1640 Fragments arranged by size: 1640 179 32 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1607 1637 1851 Size: 1607 30 214 Fragments arranged by size: 1607 214 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 926 1851 Size: 926 925 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 781 1244 1851 Size: 781 463 607 Fragments arranged by size: 781 607 463 BsiHKAI G_wGCw'C Cuts at: 0 1388 1851 Size: 1388 463 BsmI GAATG_Cn' Cuts at: 0 1757 1851 Size: 1757 94 BsmBI CGTCTCn'nnnn_ Cuts at: 0 39 1851 Size: 39 1812 Bsp1286I G_dGCh'C Cuts at: 0 972 1188 1388 1851 Size: 972 216 200 463 Fragments arranged by size: 972 463 216 200 BspHI T'CATG_A Cuts at: 0 776 1851 Size: 776 1075 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 802 1131 1851 Size: 802 329 720 Fragments arranged by size: 802 720 329 BsrDI GCAATG_nn' Cuts at: 0 1455 1851 Size: 1455 396 BsrGI T'GTAC_A Cuts at: 0 1465 1768 1851 Size: 1465 303 83 Fragments arranged by size: 1465 303 83 BstEII G'GTnAC_C Cuts at: 0 1805 1851 Size: 1805 46 BstXI CCAn_nnnn'nTGG Cuts at: 0 897 1851 Size: 897 954 BstYI r'GATC_y Cuts at: 0 744 982 1851 Size: 744 238 869 Fragments arranged by size: 869 744 238 BtsI GCAGTG_nn' Cuts at: 0 1227 1851 Size: 1227 624 DraIII CAC_nnn'GTG Cuts at: 0 1753 1851 Size: 1753 98 EaeI y'GGCC_r Cuts at: 0 1238 1851 Size: 1238 613 EcoICRI GAG'CTC Cuts at: 0 1386 1851 Size: 1386 465 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 328 349 553 1491 1811 1823 1851 Size: 328 21 204 938 320 12 28 Fragments arranged by size: 938 328 320 204 28 21 12 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 28 160 448 1851 Size: 28 132 288 1403 Fragments arranged by size: 1403 288 132 28 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 167 199 1607 1639 1851 Size: 167 32 1408 32 212 Fragments arranged by size: 1408 212 167 32 32 HindIII A'AGCT_T Cuts at: 0 280 1851 Size: 280 1571 KpnI G_GTAC'C Cuts at: 0 166 1851 Size: 166 1685 MfeI C'AATT_G Cuts at: 0 1580 1851 Size: 1580 271 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 450 653 1452 1593 1851 Size: 450 203 799 141 258 Fragments arranged by size: 799 450 258 203 141 MscI TGG'CCA Cuts at: 0 1240 1851 Size: 1240 611 MslI CAynn'nnrTG Cuts at: 0 975 1181 1202 1851 Size: 975 206 21 649 Fragments arranged by size: 975 649 206 21 MspA1I CmG'CkG Cuts at: 0 930 1228 1851 Size: 930 298 623 Fragments arranged by size: 930 623 298 NheI G'CTAG_C Cuts at: 0 385 817 1851 Size: 385 432 1034 Fragments arranged by size: 1034 432 385 NspI r_CATG'y Cuts at: 0 1464 1851 Size: 1464 387 PasI CC'CwG_GG Cuts at: 0 1801 1851 Size: 1801 50 PflMI CCAn_nnn'nTGG Cuts at: 0 172 1851 Size: 172 1679 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 626 658 1851 Size: 626 32 1193 Fragments arranged by size: 1193 626 32 PshAI GACnn'nnGTC Cuts at: 0 1441 1851 Size: 1441 410 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 774 806 1851 Size: 774 32 1045 Fragments arranged by size: 1045 774 32 PvuII CAG'CTG Cuts at: 0 930 1228 1851 Size: 930 298 623 Fragments arranged by size: 930 623 298 SacI G_AGCT'C Cuts at: 0 1388 1851 Size: 1388 463 ScaI AGT'ACT Cuts at: 0 558 1851 Size: 558 1293 SexAI A'CCwGG_T Cuts at: 0 165 1851 Size: 165 1686 SfcI C'TryA_G Cuts at: 0 1439 1851 Size: 1439 412 SmlI C'TyrA_G Cuts at: 0 619 1179 1851 Size: 619 560 672 Fragments arranged by size: 672 619 560 SspI AAT'ATT Cuts at: 0 401 717 1851 Size: 401 316 1134 Fragments arranged by size: 1134 401 316 StyI C'CwwG_G Cuts at: 0 12 1851 Size: 12 1839 TatI w'GTAC_w Cuts at: 0 556 1465 1768 1851 Size: 556 909 303 83 Fragments arranged by size: 909 556 303 83 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1767 1799 1851 Size: 1767 32 52 Fragments arranged by size: 1767 52 32 XbaI T'CTAG_A Cuts at: 0 1813 1851 Size: 1813 38 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1609 1851 Size: 1609 242 Enzymes that do cut: Acc65I AcuI AflII AleI AlfI AlwNI ApoI BaeI BanI BanII BbsI BclI BglII Bme1580I BmrI BmtI BplI Bpu10I BpuEI BsaAI BsaHI BsaXI BseRI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrDI BsrGI BstEII BstXI BstYI BtsI DraIII EaeI EcoICRI Eco57MI FalI Hin4I HindIII KpnI MfeI MmeI MscI MslI MspA1I NheI NspI PasI PflMI PpiI PshAI PsrI PvuII SacI ScaI SexAI SfcI SmlI SspI StyI TatI TstI XbaI XcmI Enzymes that do not cut: AarI AatII AccI AclI AfeI AflIII AgeI AhdI AloI ApaI ApaLI AscI AseI AsiSI AvaI AvrII BamHI BbeI BbvCI BcgI BciVI BfrBI BglI BlpI BmgBI BpmI BsaI BsaBI BsaWI BseYI BsiEI BsiWI BspEI BsrBI BsrFI BssHII BssSI BstAPI BstBI BstZ17I Bsu36I BtgI BtgZI ClaI CspCI DraI DrdI EagI EarI EciI EcoNI EcoO109I EcoRI EcoRV FseI FspI FspAI HaeII HincII HpaI KasI MluI NaeI NarI NcoI NdeI NgoMIV NotI NruI NsiI PacI PciI PfoI PmeI PmlI PpuMI PsiI PspOMI PspXI PstI PvuI RsrII SacII SalI SanDI SapI SbfI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI StuI SwaI TaqII Tth111I XhoI XmaI XmnI ZraI