Result of FASTA (ccds) for
pFN21AB8289
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8289, 302 aa
1>>>pF1KB8289 302 - 302 aa - 302 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2671+/-0.0011; mu= 1.2375+/- 0.064
mean_var=270.7623+/-63.763, 0's: 0 Z-trim(111.5): 725 B-trim: 494 in 1/51
Lambda= 0.077944
statistics sampled from 11550 (12449) to 11550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.382), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS2373.1 KLF7 gene_id:8609|Hs108|chr2 ( 302) 2026 241.1 8e-64
CCDS59438.1 KLF7 gene_id:8609|Hs108|chr2 ( 274) 1806 216.3 2.1e-56
CCDS59440.1 KLF7 gene_id:8609|Hs108|chr2 ( 269) 1802 215.8 2.8e-56
CCDS59439.1 KLF7 gene_id:8609|Hs108|chr2 ( 230) 1140 141.3 6.6e-34
CCDS7060.1 KLF6 gene_id:1316|Hs108|chr10 ( 283) 703 92.3 4.7e-19
CCDS9449.1 KLF12 gene_id:11278|Hs108|chr13 ( 402) 567 77.2 2.4e-14
CCDS66562.1 KLF5 gene_id:688|Hs108|chr13 ( 366) 559 76.2 4.1e-14
CCDS3444.1 KLF3 gene_id:51274|Hs108|chr4 ( 345) 558 76.1 4.3e-14
CCDS9448.1 KLF5 gene_id:688|Hs108|chr13 ( 457) 559 76.3 4.8e-14
CCDS14373.1 KLF8 gene_id:11279|Hs108|chrX ( 359) 537 73.7 2.3e-13
CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19 ( 355) 525 72.4 5.7e-13
CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9 ( 479) 524 72.4 7.5e-13
CCDS12285.1 KLF1 gene_id:10661|Hs108|chr19 ( 362) 510 70.7 1.9e-12
CCDS3036.1 KLF15 gene_id:28999|Hs108|chr3 ( 416) 494 69.0 7.1e-12
>>CCDS2373.1 KLF7 gene_id:8609|Hs108|chr2 (302 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 1259.3 bits: 241.1 E(32554): 8e-64
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KB8 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
250 260 270 280 290 300
pF1KB8 HI
::
CCDS23 HI
>>CCDS59438.1 KLF7 gene_id:8609|Hs108|chr2 (274 aa)
initn: 1802 init1: 1802 opt: 1806 Z-score: 1126.1 bits: 216.3 E(32554): 2.1e-56
Smith-Waterman score: 1806; 98.9% identity (99.3% similar) in 272 aa overlap (31-302:4-274)
10 20 30 40 50 60
pF1KB8 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDC
.: ::::::::::::::::::::::::::
CCDS59 MFPSWP-TCLELERYLQTEPRRISETFGEDLDC
10 20 30
70 80 90 100 110 120
pF1KB8 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 VATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
220 230 240 250 260 270
pF1KB8 HI
::
CCDS59 HI
>>CCDS59440.1 KLF7 gene_id:8609|Hs108|chr2 (269 aa)
initn: 1802 init1: 1802 opt: 1802 Z-score: 1123.8 bits: 215.8 E(32554): 2.8e-56
Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 268 aa overlap (35-302:2-269)
10 20 30 40 50 60
pF1KB8 ASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDCFLHA
::::::::::::::::::::::::::::::
CCDS59 MTCLELERYLQTEPRRISETFGEDLDCFLHA
10 20 30
70 80 90 100 110 120
pF1KB8 SPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLDSYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLDSYTA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 VNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGGVATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGGVATA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 AAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 GEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
220 230 240 250 260
>>CCDS59439.1 KLF7 gene_id:8609|Hs108|chr2 (230 aa)
initn: 1158 init1: 1136 opt: 1140 Z-score: 722.2 bits: 141.3 E(32554): 6.6e-34
Smith-Waterman score: 1140; 86.0% identity (91.6% similar) in 214 aa overlap (1-214:1-213)
10 20 30 40 50 60
pF1KB8 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS59 SYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQ
. .: . ..:... ..:. : : :
CCDS59 LISAHGR-DVSGVLHEAMSSRGTTGNTQVQSPSNATTATGVFPGLTILPST
190 200 210 220 230
250 260 270 280 290 300
pF1KB8 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
>>CCDS7060.1 KLF6 gene_id:1316|Hs108|chr10 (283 aa)
initn: 1099 init1: 661 opt: 703 Z-score: 455.6 bits: 92.3 E(32554): 4.7e-19
Smith-Waterman score: 930; 51.0% identity (66.0% similar) in 312 aa overlap (1-302:1-283)
10 20 30 40 50
pF1KB8 MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISET---FGED
:::: :::::::.::.:::::::::::: :::::::::::::.:: .: . : .
CCDS70 MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LDCFLHAS-PPPCIEESFRRL------DPLLLPVEAAICEKSSAVDILLSRDKLLSETCL
: . . ::: .. : :. : : .: . . :... ::
CCDS70 EDLWTKIILAREKKEESELKISSSPPEDTLISPSFCYNLETNSLNSDVSSESSDSSEELS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 SLQPASSSLDSYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKK
.:. . . :....:.. .. :::::::::: . :: . : : .
CCDS70 PTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSR---EPSQLWGCVPGEL--------
130 140 150 160
180 190 200 210 220 230
pF1KB8 AALSSVKVGGVATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVY
. : :.:: : . ...: :....:::::.::::::::
CCDS70 ------------------PSPGKVRSGTSGKPGDKGNGDASPDGRRRVHRCHFNGCRKVY
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 TKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSR
:::::::::::::::::::.:::::::::::::::::::.:::::::::::.::::::::
CCDS70 TKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSDELTRHFRKHTGAKPFKCSHCDRCFSR
220 230 240 250 260 270
300
pF1KB8 SDHLALHMKRHI
:::::::::::.
CCDS70 SDHLALHMKRHL
280
>>CCDS9449.1 KLF12 gene_id:11278|Hs108|chr13 (402 aa)
initn: 691 init1: 546 opt: 567 Z-score: 371.2 bits: 77.2 E(32554): 2.4e-14
Smith-Waterman score: 567; 79.3% identity (92.4% similar) in 92 aa overlap (212-302:309-400)
190 200 210 220 230 240
pF1KB8 ATAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKR-VHRCQFNGCRKVYTKSSHLKAHQ
:...:: .:::.:.:: ::::::::::::.
CCDS94 RGNRMNNQKFPCSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHR
280 290 300 310 320 330
250 260 270 280 290 300
pF1KB8 RTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKR
:::::::::::.:::: :.::::::::::::::::.::::: ::: :::::::::: .:
CCDS94 RTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRR
340 350 360 370 380 390
pF1KB8 HI
:.
CCDS94 HMLV
400
>>CCDS66562.1 KLF5 gene_id:688|Hs108|chr13 (366 aa)
initn: 579 init1: 559 opt: 559 Z-score: 366.8 bits: 76.2 E(32554): 4.1e-14
Smith-Waterman score: 559; 82.8% identity (93.1% similar) in 87 aa overlap (215-301:278-364)
190 200 210 220 230 240
pF1KB8 AAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT
:.:.: :.. :: :::::::::::: ::::
CCDS66 HNPNLPTTLPVNSQNIQPVRYNRRSNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 GEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
:::::::.::::.::::::::::::::::::::::.:. :.: ::::::::::::::
CCDS66 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN
310 320 330 340 350 360
>>CCDS3444.1 KLF3 gene_id:51274|Hs108|chr4 (345 aa)
initn: 678 init1: 537 opt: 558 Z-score: 366.5 bits: 76.1 E(32554): 4.3e-14
Smith-Waterman score: 558; 77.8% identity (91.1% similar) in 90 aa overlap (213-302:254-343)
190 200 210 220 230 240
pF1KB8 TAAAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRT
. :.:.:::...:: ::::::::::::.::
CCDS34 SPPQALLQENHPSVIVQPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRT
230 240 250 260 270 280
250 260 270 280 290 300
pF1KB8 HTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
:::::::::.:::: :.::::::::::.::::: :::.: ::: :::::::::: :::.
CCDS34 HTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHM
290 300 310 320 330 340
CCDS34 LV
>>CCDS9448.1 KLF5 gene_id:688|Hs108|chr13 (457 aa)
initn: 559 init1: 559 opt: 559 Z-score: 365.7 bits: 76.3 E(32554): 4.8e-14
Smith-Waterman score: 559; 82.8% identity (93.1% similar) in 87 aa overlap (215-301:369-455)
190 200 210 220 230 240
pF1KB8 AAAVTAAGAVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHT
:.:.: :.. :: :::::::::::: ::::
CCDS94 HNPNLPTTLPVNSQNIQPVRYNRRSNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT
340 350 360 370 380 390
250 260 270 280 290 300
pF1KB8 GEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
:::::::.::::.::::::::::::::::::::::.:. :.: ::::::::::::::
CCDS94 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN
400 410 420 430 440 450
>>CCDS14373.1 KLF8 gene_id:11279|Hs108|chrX (359 aa)
initn: 570 init1: 527 opt: 537 Z-score: 353.5 bits: 73.7 E(32554): 2.3e-13
Smith-Waterman score: 537; 41.1% identity (69.0% similar) in 197 aa overlap (110-301:166-356)
80 90 100 110 120 130
pF1KB8 LLLPVEAAICEKSSAVDILLSRDKLLSETCLSLQPASSSLDSYTAVNQAQLNAVTSLTPP
.:: ..: . .: :. . :.:
CCDS14 PTVLTPGSVLTSSQSTGSQQILHVIHTIPSVSLPNKMGGLKTIPVVVQSLPMVYTTLPAD
140 150 160 170 180 190
140 150 160 170 180 190
pF1KB8 SSPELSRHLVKTSQTLSAVDGTVTLKLVAKKAALSSVKVGGVATAAAAVTAAGAVKSGQS
..: . . : . :: . .. . ...: ... . . .. ....:..: :.
CCDS14 GGP------AAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEESTIESGSSALQSLQG
200 210 220 230 240
200 210 220 230 240 250
pF1KB8 DSDQGGL-----GAEACPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWE
... . : :. ...:.:.:.: :: ::::::::::::.: :::::::::.:.
CCDS14 LQQEPAAMAQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWD
250 260 270 280 290 300
260 270 280 290 300
pF1KB8 GCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI
:: :.::::::::::.::::: :::.:. :.: :::::::.:: .::
CCDS14 GCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTM
310 320 330 340 350
302 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:03:26 2016 done: Fri Nov 4 22:03:27 2016
Total Scan time: 2.820 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]