FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8412, 923 aa
  1>>>pF1KB8412 923 - 923 aa - 923 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6744+/-0.000823; mu= 12.0412+/- 0.050
 mean_var=164.4936+/-31.312, 0's: 0 Z-trim(113.8): 9  B-trim: 2 in 1/51
 Lambda= 0.100000
 statistics sampled from 14431 (14436) to 14431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.443), width:  16
 Scan time:  4.930

The best scores are:                                      opt bits E(32554)
CCDS34863.1 CCAR2 gene_id:57805|Hs108|chr8         ( 923) 6160 901.1       0


>>CCDS34863.1 CCAR2 gene_id:57805|Hs108|chr8              (923 aa)
 initn: 6160 init1: 6160 opt: 6160  Z-score: 4809.0  bits: 901.1 E(32554):    0
Smith-Waterman score: 6160; 99.9% identity (99.9% similar) in 923 aa overlap (1-923:1-923)

               10        20        30        40        50        60
pF1KB8 MSQFKRQRINPLPGGRNFSGTASTSLLGPPPGLLTPPVATELSQNARHLQGGEKQRVFTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSQFKRQRINPLPGGRNFSGTASTSLLGPPPGLLTPPVATELSQNARHLQGGEKQRVFTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQMLSNQP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS34 IVTSLHDYFGVVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLKSPAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FPARGPHGRLDQGRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYTVDSPICDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPARGPHGRLDQGRSDDYDSKKRKQRAGGEPWGAKKPRHDLPPYRVHLTPYTVDSPICDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDAGAEPITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LELQRRYRSLLVPSDFLSVHLSWLSAFPLSQPFSLHHPSRIQVSSEKEAAPDAGAEPITA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DSDPAYSSKVLLLSSPGLEELYRCCMLFVDDMAEPRETPEHPLKQIKFLLGRKEEEAVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DSDPAYSSKVLLLSSPGLEELYRCCMLFVDDMAEPRETPEHPLKQIKFLLGRKEEEAVLV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSGCTKWWRFAEFQYLQPGPPRRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSGCTKWWRFAEFQYLQPGPPRRLQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TVVVYLPDVWTIMPTLEEWEALCQQKAAEAAPPTQEAQGETEPTEQAPDALEQAADTSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TVVVYLPDVWTIMPTLEEWEALCQQKAAEAAPPTQEAQGETEPTEQAPDALEQAADTSRR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 NAETPEATTQQETDTDLPEAPPPPLEPAVIARPGCVNLSLHGIVEDRRPKERISFEVMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NAETPEATTQQETDTDLPEAPPPPLEPAVIARPGCVNLSLHGIVEDRRPKERISFEVMVL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 AELFLEMLQRDFGYRVYKMLLSLPEKVVSPPEPEKEEAAKEEATKEEEAIKEEVVKEPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AELFLEMLQRDFGYRVYKMLLSLPEKVVSPPEPEKEEAAKEEATKEEEAIKEEVVKEPKD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 EAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPRGEASEDLCEMALDPELLLLRDDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPRGEASEDLCEMALDPELLLLRDDGE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 EEFAGAKLEDSEVRSVASNQSEMEFSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEFAGAKLEDSEVRSVASNQSEMEFSSLQDMPKELDPSAVLPLDCLLAFVFFDANWCGYL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 HRRDLERILLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRQEGLDGGLPEEVLFGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HRRDLERILLTLGIRLSAEQAKQLVSRVVTQNICQYRSLQYSRQEGLDGGLPEEVLFGNL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 DLLPPPGKSTKPGAAPTEHKALVSHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DLLPPPGKSTKPGAAPTEHKALVSHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 EESHNRFSATEVTNKTLAAEMQELRVRLAEAEETARTAERQKSQLQRLLQELRRRLTPLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EESHNRFSATEVTNKTLAAEMQELRVRLAEAEETARTAERQKSQLQRLLQELRRRLTPLQ
              850       860       870       880       890       900

              910       920   
pF1KB8 LEIQRVVEKADSWVEKEEPAPSN
       :::::::::::::::::::::::
CCDS34 LEIQRVVEKADSWVEKEEPAPSN
              910       920   




923 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:43:02 2016 done: Tue Nov  8 06:43:02 2016
 Total Scan time:  4.930 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]