Result of FASTA (omim) for
pFN21AB6319
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6319, 260 aa
1>>>pF1KB6319 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4133+/-0.000344; mu= 14.5921+/- 0.022
mean_var=68.3058+/-13.427, 0's: 0 Z-trim(114.9): 16 B-trim: 63 in 3/55
Lambda= 0.155183
statistics sampled from 24935 (24945) to 24935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.292), width: 16
Scan time: 6.470
The best scores are: opt bits E(85289)
NP_001010844 (OMIM: 615375) interleukin-1 receptor ( 260) 1675 383.6 1.9e-106
XP_011533749 (OMIM: 615375) PREDICTED: interleukin ( 257) 1604 367.7 1.1e-101
XP_006715399 (OMIM: 615375) PREDICTED: interleukin ( 279) 1604 367.8 1.2e-101
XP_016865753 (OMIM: 615375) PREDICTED: interleukin ( 156) 824 193.0 2.7e-49
XP_016865754 (OMIM: 615375) PREDICTED: interleukin ( 150) 805 188.7 5.1e-48
XP_011533750 (OMIM: 615375) PREDICTED: interleukin ( 157) 804 188.5 6.1e-48
>>NP_001010844 (OMIM: 615375) interleukin-1 receptor-ass (260 aa)
initn: 1675 init1: 1675 opt: 1675 Z-score: 2032.2 bits: 383.6 E(85289): 1.9e-106
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
190 200 210 220 230 240
250 260
pF1KB6 ASKVFITFEVKGKEKRKKHL
::::::::::::::::::::
NP_001 ASKVFITFEVKGKEKRKKHL
250 260
>>XP_011533749 (OMIM: 615375) PREDICTED: interleukin-1 r (257 aa)
initn: 1604 init1: 1604 opt: 1604 Z-score: 1946.4 bits: 367.7 E(85289): 1.1e-101
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
190 200 210 220 230 240
250 260
pF1KB6 ASKVFITFEVKGKEKRKKHL
:::::::::
XP_011 ASKVFITFEKLLRRGGV
250
>>XP_006715399 (OMIM: 615375) PREDICTED: interleukin-1 r (279 aa)
initn: 1604 init1: 1604 opt: 1604 Z-score: 1945.8 bits: 367.8 E(85289): 1.2e-101
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
190 200 210 220 230 240
250 260
pF1KB6 ASKVFITFEVKGKEKRKKHL
:::::::::
XP_006 ASKVFITFEQLLESFFNIPTNNYSQIAMSPVNYHESHIK
250 260 270
>>XP_016865753 (OMIM: 615375) PREDICTED: interleukin-1 r (156 aa)
initn: 824 init1: 824 opt: 824 Z-score: 1005.9 bits: 193.0 E(85289): 2.7e-49
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 126 aa overlap (124-249:1-126)
100 110 120 130 140 150
pF1KB6 YITQSLQQQGVQAENITVTKDFRRVENAYHMEAEVCITFTEFGKMQNICNFLVEKLDSSV
::::::::::::::::::::::::::::::
XP_016 MEAEVCITFTEFGKMQNICNFLVEKLDSSV
10 20 30
160 170 180 190 200 210
pF1KB6 VISPPQFYHTPGSVENLRRQACLVAVENAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VISPPQFYHTPGSVENLRRQACLVAVENAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEG
40 50 60 70 80 90
220 230 240 250 260
pF1KB6 QIDDHQSSRLSSSLTVQQKIKSATIHAASKVFITFEVKGKEKRKKHL
::::::::::::::::::::::::::::::::::::
XP_016 QIDDHQSSRLSSSLTVQQKIKSATIHAASKVFITFEQLLESFFNIPTNNYSQIAMSPVNY
100 110 120 130 140 150
XP_016 HESHIK
>>XP_016865754 (OMIM: 615375) PREDICTED: interleukin-1 r (150 aa)
initn: 804 init1: 804 opt: 805 Z-score: 983.1 bits: 188.7 E(85289): 5.1e-48
Smith-Waterman score: 805; 92.2% identity (95.0% similar) in 141 aa overlap (1-141:1-140)
10 20 30 40 50 60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
::::::: : .. ::..
XP_016 AYHMEAEKLHIFEKIF-MQSVPLKCISYESI
130 140 150
>>XP_011533750 (OMIM: 615375) PREDICTED: interleukin-1 r (157 aa)
initn: 804 init1: 804 opt: 804 Z-score: 981.6 bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 804; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
:::::::
XP_011 AYHMEAEQLLESFFNIPTNNYSQIAMSPVNYHESHIK
130 140 150
260 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:41:29 2016 done: Fri Nov 4 22:41:30 2016
Total Scan time: 6.470 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]